RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PPM1NQ8N819 430 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 OR2L5Q8NG80 312 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 MS4A6EQ96DS6 147 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 PTCD3Q96EY7 689 aaKnown RBP16.39■□□□□ 0.21
COL7A1-206ENST00000466591 VMP1Q96GC9 406 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 FRMD6Q96NE9 622 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 SERINC2Q96SA4 455 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 RBBP8Q99708 897 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 NPAS2Q99743 824 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 CLCA3PQ9Y6N3 262 aa16.39■□□□□ 0.21
COL7A1-206ENST00000466591 DIDO1Q9BTC0 2240 aaKnown RBP16.38■□□□□ 0.21
COL7A1-206ENST00000466591 TCRBV9S1A1TA0A576 114 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 CTAGE15A4D2H0 777 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 PRRG2O14669 202 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 ASNA1O43681 348 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 NME2P1O60361 137 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 CDC40O60508 579 aaKnown RBP eCLIP16.38■□□□□ 0.21
COL7A1-206ENST00000466591 NEURL1O76050 574 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 SNRPB2P08579 225 aaKnown RBP16.38■□□□□ 0.21
COL7A1-206ENST00000466591 PCNAP12004 261 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 COX6B1P14854 86 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 NME2P22392 152 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 HTR1EP28566 365 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 HNRNPH1P31943 449 aaKnown RBP16.38■□□□□ 0.21
COL7A1-206ENST00000466591 STX2P32856 288 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 HLCSP50747 726 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 PLTPP55058 493 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 MTTPP55157 894 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 HSD17B7P56937 341 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 CAV1Q03135 178 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 XKRXQ6PP77 449 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 CLNKQ7Z7G1 428 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 CTAGE6Q86UF2 777 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 MYLK4Q86YV6 388 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-206ENST00000466591 SPPL2CQ8IUH8 684 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 CPSF7Q8N684 471 aaKnown RBP16.38■□□□□ 0.21
COL7A1-206ENST00000466591 POGLUT1Q8NBL1 392 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 SPATA4Q8NEY3 305 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 ITLN2Q8WWU7 325 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-206ENST00000466591 UBE2E3Q969T4 207 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 EFCAB11Q9BUY7 163 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 ROGDIQ9GZN7 287 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 EHD1Q9H4M9 534 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 NT5DC2Q9H857 520 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 PYCARDQ9ULZ3 195 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 ANGPTL3Q9Y5C1 460 aa16.38■□□□□ 0.21
COL7A1-206ENST00000466591 KLF2Q9Y5W3 355 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-206ENST00000466591 POLEQ07864 2286 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 ASPDHA6ND91 283 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 RAD51CO43502 376 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 ZFAND5O76080 213 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 GSTA2P09210 222 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 SMIM10L1P0DMW3 83 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 CD1DP15813 335 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 CERS1P27544 350 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 KCNC1P48547 511 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 MEOX1P50221 254 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 SSR4P51571 173 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 TERF2Q15554 542 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 GRTP1Q5TC63 336 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 BNC2Q6ZN30 1099 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-206ENST00000466591 MCEMP1Q8IX19 187 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 ZNF595Q8IYB9 648 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 TMEM132CQ8N3T6 1108 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 SRFBP1Q8NEF9 429 aaKnown RBP16.37■□□□□ 0.21
COL7A1-206ENST00000466591 STAG3L4Q8TBR4 150 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 ASB15Q8WXK1 588 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 NCLNQ969V3 563 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 ESAMQ96AP7 390 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 SMIM10Q96HG1 83 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 KCNC2Q96PR1 638 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 GPR22Q99680 433 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 CENPKQ9BS16 269 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 ADAP2Q9NPF8 381 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 TIMMDC1Q9NPL8 285 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 SMYD2Q9NRG4 433 aa16.37■□□□□ 0.21
COL7A1-206ENST00000466591 NBPF19A0A087WUL8 3843 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 IGKV3D-11A0A0A0MRZ8 115 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 CXorf49A8MYA2 514 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-206ENST00000466591 ITGA10O75578 1167 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 MSH2P43246 934 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 PLGLB1Q02325 96 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 CHIT1Q13231 466 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 RUNX2Q13950 521 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 DOC2AQ14183 400 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 EFTUD2Q15029 972 aaKnown RBP eCLIP16.36■□□□□ 0.21
COL7A1-206ENST00000466591 OR4D1Q15615 310 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 CDKL4Q5MAI5 379 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 ZNF468Q5VIY5 522 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-206ENST00000466591 LRRC70Q7Z2Q7 622 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 SREK1Q8WXA9 508 aaKnown RBP16.36■□□□□ 0.21
COL7A1-206ENST00000466591 DAZLQ92904 295 aaKnown RBP16.36■□□□□ 0.21
COL7A1-206ENST00000466591 TMEM79Q9BSE2 394 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 ALG9Q9H6U8 611 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 NMRAL1Q9HBL8 299 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 OPTCQ9UBM4 332 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 UNC79Q9P2D8 2635 aa16.36■□□□□ 0.21
COL7A1-206ENST00000466591 NOTCH2Q04721 2471 aa16.35■□□□□ 0.21
COL7A1-206ENST00000466591 A8MVJ9 347 aa16.35■□□□□ 0.21
COL7A1-206ENST00000466591 C4orf51C9J302 202 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms