RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 DOC2AQ14183 400 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 SLBPQ14493 270 aaKnown RBP eCLIP11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 TBCCQ15814 346 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 NKG7Q16617 165 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 MUM1Q2TAK8 710 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 HKDC1Q2TB90 917 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 XKR6Q5GH73 641 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 TNFAIP8L3Q5GJ75 292 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 PRMT9Q6P2P2 845 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 IGFL2Q6UWQ7 119 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 TMIGD1Q6UXZ0 262 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 ZYG11AQ6WRX3 759 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 ASPGQ86U10 573 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 KRT78Q8N1N4 520 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 BCORP1Q8N888 145 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 RDH11Q8TC12 318 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 TM4SF19Q96DZ7 209 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 CCDC126Q96EE4 140 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 PGM2Q96G03 612 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 EFCAB11Q9BUY7 163 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 ERVK-6Q9BXR3 956 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 PITHD1Q9GZP4 211 aaPredicted RBP11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 IQCGQ9H095 443 aaKnown RBP11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 CENPHQ9H3R5 247 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 P4HTMQ9NXG6 502 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 ZFP69BQ9UJL9 534 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 MID2Q9UJV3 735 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 NXT1Q9UKK6 140 aaKnown RBP11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 PCTPQ9UKL6 214 aa11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 RUVBL1Q9Y265 456 aaKnown RBP11.25□□□□□ -0.61
SQSTM1-206ENST00000466342 PRRC2AP48634 2157 aaKnown RBP11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 TRGV8A0A0C4DH27 118 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 G3V2L1 256 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 C19orf84I3L1E1 186 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 AGPSO00116 658 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 MASP2O00187 686 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 PCDH17O14917 1159 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 UGDHO60701 494 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 SPAG7O75391 227 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 WFS1O76024 890 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 MED26O95402 600 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 MYZAPP0CAP1 466 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 ATXN8OSP0DMR3 200 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 MYL2P10916 166 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 CREB1P16220 341 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 CD22P20273 847 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 AGAP20933 346 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 GSTM2P28161 218 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 KIR3DL1P43629 444 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 PRKAA2P54646 552 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 LAPTM5Q13571 262 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 PAGE2BQ5JRK9 111 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF678Q5SXM1 525 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 GARNL3Q5VVW2 1013 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF324BQ6AW86 544 aaPredicted RBP11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 RPUSD3Q6P087 351 aaKnown RBP11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 PPP1R32Q7Z5V6 425 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.24□□□□□ -0.613e-9■■■□□ 18.1
SQSTM1-206ENST00000466342 ARHGEF39Q8N4T4 335 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 ANKRD53Q8N9V6 530 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 CCDC63Q8NA47 563 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 CAMKVQ8NCB2 501 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 TTLQ8NG68 377 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF483Q8TF39 744 aaPredicted RBP11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC13A3Q8WWT9 602 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 MTFMTQ96DP5 389 aaKnown RBP11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 L3HYPDHQ96EM0 354 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 VPS50Q96JG6 964 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 C10orf90Q96M02 699 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 TMEM237Q96Q45 408 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 SPSB2Q99619 263 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 SPOCK3Q9BQ16 436 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 C12orf65Q9H3J6 166 aaKnown RBP11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 IPPKQ9H8X2 491 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 ZBTB26Q9HCK0 441 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 ZNF304Q9HCX3 659 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 CDC14AQ9UNH5 594 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 PLLPQ9Y342 182 aa11.24□□□□□ -0.61
SQSTM1-206ENST00000466342 VSTM2BA6NLU5 285 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 OR7A17O14581 309 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 NDUFS4O43181 175 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 TYROBPO43914 113 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 STATHP02808 62 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 CPA3P15088 417 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 IMPDH1P20839 514 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 HNF4AP41235 474 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 OR1D4P47884 311 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 TDGF1P3P51864 188 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 RGS1Q08116 209 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 AIMP2Q13155 320 aaKnown RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 PWP1Q13610 501 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 RBBP5Q15291 538 aaKnown RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 TLR1Q15399 786 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 HIST2H2ACQ16777 129 aaPredicted RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 NDUFA9Q16795 377 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 LIPJQ5W064 366 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 HIST2H2AA3Q6FI13 130 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 GRHL2Q6ISB3 625 aa11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 TMEM214Q6NUQ4 689 aaKnown RBP11.23□□□□□ -0.61
SQSTM1-206ENST00000466342 MED27Q6P2C8 311 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms