RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 AMBNQ9NP70 447 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 MIEF1Q9NQG6 463 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TAC3Q9UHF0 121 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 SH3GLB1Q9Y371 365 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 SNX8Q9Y5X2 465 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 MUC22E2RYF6 1773 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-217ENST00000466159 PRAMEF33A0A0G2JMD5 474 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 FEZF1A0PJY2 475 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 PLPP1O14494 284 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 PRAMEF10O60809 474 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 NFATC1O95644 943 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 PCCBP05166 539 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 LCKP06239 509 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 KELP23276 732 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 PSMB5P28074 263 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 IL12RB1P42701 662 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 CCR3P51677 355 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 CNTN1Q12860 1018 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 FADDQ13158 208 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 EXOC3L2Q2M3D2 409 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 LCTLQ6UWM7 567 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 UNC5DQ6UXZ4 953 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 PDZD3Q86UT5 571 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 ADGRF3Q8IZF5 1079 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 OXR1Q8N573 874 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 ANKRD53Q8N9V6 530 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 OR9Q2Q8NGE9 314 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 OR4C15Q8NGM1 316 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 TRUB1Q8WWH5 349 aaKnown RBP8.54□□□□□ -1.04
SYNE1-217ENST00000466159 F2RL3Q96RI0 385 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 ALOXE3Q9BYJ1 711 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 CUEDC1Q9NWM3 386 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-217ENST00000466159 C5AR2Q9P296 337 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 RAB23Q9ULC3 237 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 AP1M2Q9Y6Q5 423 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 ALPK3Q96L96 1907 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 TBC1D3BA6NDS4 549 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 RB1P06400 928 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 EPHX1P07099 455 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 POU2F1P14859 743 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 C21orf33P30042 268 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-217ENST00000466159 RPL3P39023 403 aaKnown RBP8.54□□□□□ -1.04
SYNE1-217ENST00000466159 RPS26P62854 115 aaKnown RBP8.54□□□□□ -1.04
SYNE1-217ENST00000466159 PHEXP78562 749 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 MVKQ03426 396 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 UBE3AQ05086 875 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 RBBP4Q09028 425 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 GANABQ14697 944 aaKnown RBP8.54□□□□□ -1.04
SYNE1-217ENST00000466159 NR1D2Q14995 579 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 CCDC80Q76M96 950 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 PRSS48Q7RTY5 328 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 BTLAQ7Z6A9 289 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 SLCO6A1Q86UG4 719 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 P2RY8Q86VZ1 359 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 CCDC103Q8IW40 242 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 LGI4Q8N135 537 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 LZICQ8WZA0 190 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 UBE2E3Q969T4 207 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 COX14Q96I36 57 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 ASB16Q96NS5 453 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 SIGLEC11Q96RL6 698 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 ZNF347Q96SE7 839 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 ZNF717Q9BY31 904 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-217ENST00000466159 CXorf36Q9H7Y0 433 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 SLAMF7Q9NQ25 335 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 FAIMQ9NVQ4 179 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 SELENONQ9NZV5 590 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 HCN2Q9UL51 889 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 HEATR5BQ9P2D3 2071 aa8.54□□□□□ -1.04
SYNE1-217ENST00000466159 DNAH14Q0VDD8 3507 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 IGLON5A6NGN9 336 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ANKDD1BA6NHY2 528 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PCDH17O14917 1159 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 IDUAP35475 653 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 TGFBR1P36897 503 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 RXRGP48443 463 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 IDH2P48735 452 aaKnown RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ST13P50502 369 aaKnown RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PSMD7P51665 324 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PCBP3P57721 371 aaKnown RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 NCS1P62166 190 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 CYP2A13Q16696 494 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 DUSP7Q16829 419 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 MICAQ29983 383 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ZNF630Q2M218 657 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 CRB2Q5IJ48 1285 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PNCKQ6P2M8 343 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 C17orf64Q86WR6 236 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 P3H2Q8IVL5 708 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 DCUN1D3Q8IWE4 304 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 KRT78Q8N1N4 520 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 SVOPQ8N4V2 548 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 SUSD6Q92537 303 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PROX1Q92786 737 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 RPL3LQ92901 407 aaKnown RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 MTERF3Q96E29 417 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 SH3YL1Q96HL8 342 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 CCNB1IP1Q9NPC3 277 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PRSS16Q9NQE7 514 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 RHCGQ9UBD6 479 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms