RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 DNAJB13P59910 316 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 NAA20P61599 178 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 SKP1P63208 163 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 OCA2Q04671 838 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 CPSF6Q16630 551 aaKnown RBP eCLIP16.74■□□□□ 0.27
COL7A1-205ENST00000465238 CFAP157Q5JU67 520 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 NIPAL1Q6NVV3 410 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 Q6ZS92 163 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 COX15Q7KZN9 410 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 HDXQ7Z353 690 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 OR7G3Q8NG95 312 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 CDK15Q96Q40 435 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 SSU72Q9NP77 194 aaKnown RBP16.74■□□□□ 0.27
COL7A1-205ENST00000465238 OXSMQ9NWU1 459 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 SLC17A7Q9P2U7 560 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 STK38LQ9Y2H1 464 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 HS3ST3B1Q9Y662 390 aa16.74■□□□□ 0.27
COL7A1-205ENST00000465238 H0YIG0 161 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 H0YIV9 168 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 SOCS6O14544 535 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 TYROBPO43914 113 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 CBX6O95503 412 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 MLYCDO95822 493 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 ZNF888P0CJ79 500 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 NAGLUP54802 743 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 RAB8AP61006 207 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 PHEXP78562 749 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 ASPHQ12797 758 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 HYAL2Q12891 473 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 TRAF3Q13114 568 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 DDX39BQ13838 428 aaKnown RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 DSG2Q14126 1118 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 NR6A1Q15406 480 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 ZRSR2Q15696 482 aaKnown RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 TNFAIP8L3Q5GJ75 292 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 IRAK1BP1Q5VVH5 260 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 LIPMQ5VYY2 423 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 TTC19Q6DKK2 380 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 ADNP2Q6IQ32 1131 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 VN1R5Q7Z5H4 357 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 OR4F6Q8NGB9 312 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 UTP15Q8TED0 518 aaKnown RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 ZNF473Q8WTR7 871 aaKnown RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 FAR2Q96K12 515 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 KLHL31Q9H511 634 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 ZBTB20Q9HC78 741 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 KCNK9Q9NPC2 374 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 SEMA3GQ9NS98 782 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 TRPC4Q9UBN4 977 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 CTSFQ9UBX1 484 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 ZNF282Q9UDV7 671 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 NAALAD2Q9Y3Q0 740 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 ACTL7BQ9Y614 415 aa16.73■□□□□ 0.27
COL7A1-205ENST00000465238 COPG1Q9Y678 874 aaKnown RBP16.73■□□□□ 0.27
COL7A1-205ENST00000465238 POLEQ07864 2286 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 LRIT2A6NDA9 550 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 VSTM2BA6NLU5 285 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 SGK494L7N484 410 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 PPP6CO00743 305 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 KLHL18O94889 574 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 PIK3CBP42338 1070 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 SNRPNP63162 240 aaKnown RBP16.72■□□□□ 0.27
COL7A1-205ENST00000465238 TGM3Q08188 693 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 PCLAFQ15004 111 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 TUBB8Q3ZCM7 444 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 DEFB134Q4QY38 66 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 CRB2Q5IJ48 1285 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 AGAP7PQ5VUJ5 663 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 KIRREL2Q6UWL6 708 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 CHSY3Q70JA7 882 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 PRSS41Q7RTY9 318 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 C10orf107Q8IVU9 208 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 AFAP1L2Q8N4X5 818 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 SREK1Q8WXA9 508 aaKnown RBP16.72■□□□□ 0.27
COL7A1-205ENST00000465238 GAL3ST3Q96A11 431 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 CMTM7Q96FZ5 175 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 AGAP4Q96P64 663 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 BARD1Q99728 777 aaKnown RBP16.72■□□□□ 0.27
COL7A1-205ENST00000465238 WDR77Q9BQA1 342 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-205ENST00000465238 REXO4Q9GZR2 422 aaKnown RBP16.72■□□□□ 0.27
COL7A1-205ENST00000465238 SOX17Q9H6I2 414 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-205ENST00000465238 TMBIM4Q9HC24 238 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 TSC22D4Q9Y3Q8 395 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 PCDHGA10Q9Y5H3 936 aa16.72■□□□□ 0.27
COL7A1-205ENST00000465238 ERI3O43414 337 aaKnown RBP16.71■□□□□ 0.27
COL7A1-205ENST00000465238 GALR3O60755 368 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-205ENST00000465238 TRIM13O60858 407 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 TGFB1P01137 390 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 RNF224P0DH78 156 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 SMIM10L1P0DMW3 83 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 HNRNPH1P31943 449 aaKnown RBP16.71■□□□□ 0.27
COL7A1-205ENST00000465238 LCP2Q13094 533 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 IFT88Q13099 833 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 ELOAQ14241 798 aaKnown RBP16.71■□□□□ 0.27
COL7A1-205ENST00000465238 GGTA1PQ4G0N0 100 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 TRIM40Q6P9F5 258 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 IGFL2Q6UWQ7 119 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 SHISA6Q6ZSJ9 500 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 GPRIN3Q6ZVF9 776 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 CUZD1Q86UP6 607 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms