RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 NUDT13Q86X67 352 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 KIRREL3Q8IZU9 778 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 ACOT4Q8N9L9 421 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 OR5T3Q8NGG3 340 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 FER1L6-AS2Q96M78 137 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 SH3GL2Q99962 352 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 AICDAQ9GZX7 198 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 LYRM4Q9HD34 91 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 MS4A12Q9NXJ0 267 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 SCN3AQ9NY46 2000 aa18.7■□□□□ 0.58
COL9A3-204ENST00000463487 C19orf25Q9UFG5 118 aaPredicted RBP18.7■□□□□ 0.58
COL9A3-204ENST00000463487 SYNDIG1LA6NDD5 238 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 C4orf51C9J302 202 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 SAP18O00422 153 aaKnown RBP18.69■□□□□ 0.58
COL9A3-204ENST00000463487 CLDN4O14493 209 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 PLPP1O14494 284 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 UBFD1O14562 309 aaKnown RBP18.69■□□□□ 0.58
COL9A3-204ENST00000463487 SCELO95171 688 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 B3GALT4O96024 378 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 UMODP07911 640 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 DHRS4L1P0CG22 281 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 ATP5A1P25705 553 aaKnown RBP18.69■□□□□ 0.58
COL9A3-204ENST00000463487 CERS1P27544 350 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 RAB38P57729 211 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 SNRPNP63162 240 aaKnown RBP18.69■□□□□ 0.58
COL9A3-204ENST00000463487 OLR1P78380 273 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 IMPG1Q17R60 797 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 BORAQ6PGQ7 559 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 CYP20A1Q6UW02 462 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 MRGPREQ86SM8 312 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 CUZD1Q86UP6 607 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 TRIM42Q8IWZ5 723 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 CA13Q8N1Q1 262 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 ZCCHC7Q8N3Z6 543 aaKnown RBP18.69■□□□□ 0.58
COL9A3-204ENST00000463487 RNF175Q8N4F7 328 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 ADAMTS17Q8TE56 1095 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 APOBEC4Q8WW27 367 aaKnown RBP18.69■□□□□ 0.58
COL9A3-204ENST00000463487 PRDM7Q9NQW5 492 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 VPS29Q9UBQ0 182 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 PTPRQQ9UMZ3 2332 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 CELSR3Q9NYQ7 3312 aa18.69■□□□□ 0.58
COL9A3-204ENST00000463487 WDR91A4D1P6 747 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 BLACEA4D250 179 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 TMEM114B3SHH9 223 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 AZIN1O14977 448 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 HSPA4LO95757 839 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 ACPPP15309 386 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 CHI3L2Q15782 390 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 DEFB109BQ30KR1 87 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 ARL13AQ5H913 290 aaPredicted RBP18.68■□□□□ 0.58
COL9A3-204ENST00000463487 ATP1A1-AS1Q5TC04 95 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 FAM69BQ5VUD6 431 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 ZCCHC23Q6ZST2 131 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 MED25Q71SY5 747 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 TMEM102Q8N9M5 508 aaPredicted RBP18.68■□□□□ 0.58
COL9A3-204ENST00000463487 ARL8AQ96BM9 186 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 ARHGAP9Q9BRR9 750 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 RBCK1Q9BYM8 510 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 SHCBP1LQ9BZQ2 653 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 PFDN4Q9NQP4 134 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 FARSBQ9NSD9 589 aaKnown RBP18.68■□□□□ 0.58
COL9A3-204ENST00000463487 LYARQ9NX58 379 aaKnown RBP18.68■□□□□ 0.58
COL9A3-204ENST00000463487 PHF11Q9UIL8 331 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 ADAM29Q9UKF5 820 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 DAPP1Q9UN19 280 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 G3BP2Q9UN86 482 aaKnown RBP18.68■□□□□ 0.58
COL9A3-204ENST00000463487 TIMM22Q9Y584 194 aa18.68■□□□□ 0.58
COL9A3-204ENST00000463487 USP24Q9UPU5 2620 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 RTCAO00442 366 aaKnown RBP18.67■□□□□ 0.58
COL9A3-204ENST00000463487 C8orf89P0DMQ9 161 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 TLX1P31314 330 aaPredicted RBP18.67■□□□□ 0.58
COL9A3-204ENST00000463487 CCR10P46092 362 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 LIM2P55344 173 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 RUNX2Q13950 521 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 UBE3DQ7Z6J8 389 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 CLEC1AQ8NC01 280 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 C7orf57Q8NEG2 295 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 MGARPQ8TDB4 240 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 CRELD1Q96HD1 420 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 KCNA7Q96RP8 456 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 VN1R1Q9GZP7 353 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 DDX31Q9H8H2 851 aaKnown RBP18.67■□□□□ 0.58
COL9A3-204ENST00000463487 LHX6Q9UPM6 363 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 MMACHCQ9Y4U1 282 aa18.67■□□□□ 0.58
COL9A3-204ENST00000463487 SERTM1A2A2V5 107 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 ALOX12BO75342 701 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 GUCY1B2O75343 617 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 CDC123O75794 336 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-204ENST00000463487 ETHE1O95571 254 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 FURINP09958 794 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 BUD31P41223 144 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-204ENST00000463487 SLAMF1Q13291 335 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 ATP1A4Q13733 1029 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 MPP2Q14168 576 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 SPIN4Q56A73 249 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 TCHHL1Q5QJ38 904 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-204ENST00000463487 QSOX2Q6ZRP7 698 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 PPP1R32Q7Z5V6 425 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 LAPTM4BQ86VI4 370 aa18.66■□□□□ 0.58
COL9A3-204ENST00000463487 ZNF595Q8IYB9 648 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms