RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	SIRT5	Q9NXA8	310 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	MED26	O95402	600 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	SERPINE1	P05121	402 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	UMOD	P07911	640 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	H2AFX	P16104	143 aa	Predicted RBP	10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	HNRNPH1	P31943	449 aa	Known RBP	10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	NAGLU	P54802	743 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	ACTN3	Q08043	901 aa	Predicted RBP	10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	KCNAB2	Q13303	367 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	FBXO48	Q5FWF7	155 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	NUDCD3	Q8IVD9	361 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	KBTBD2	Q8IY47	623 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	METTL4	Q8N3J2	472 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	C9orf43	Q8TAL5	461 aa	Predicted RBP	10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	SOX17	Q9H6I2	414 aa	Predicted RBP	10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	PRDM7	Q9NQW5	492 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	10.1	□□□□□ -0.79	6e-8	■■□□□ 14.2
UBR4-208	ENST00000459947	ABI3	Q9P2A4	366 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	MKL2	Q9ULH7	1088 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	MAPRE3	Q9UPY8	281 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	MRPS2	Q9Y399	296 aa	Known RBP	10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	MRPS18B	Q9Y676	258 aa	Known RBP	10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	KCNMB2	Q9Y691	235 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	APC2	O95996	2303 aa		10.1	□□□□□ -0.79
UBR4-208	ENST00000459947	NSG1	A0A0A6YYJ2	146 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	NPIPB8	E9PQR5	432 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	OR4F21	O95013	312 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	TAS2R50	P59544	299 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	IL10RA	Q13651	578 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	IMPG1	Q17R60	797 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	VWA5B1	Q5TIE3	1220 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	OR52B6	Q8NGF0	335 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	F2RL3	Q96RI0	385 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	LPAR4	Q99677	370 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	KCNK9	Q9NPC2	374 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	DAPP1	Q9UN19	280 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	LRRC14B	A6NHZ5	514 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	HMGB1P1	B2RPK0	211 aa	Predicted RBP	10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	PRMT3	O60678	531 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	CEACAM4	O75871	244 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	WT1	P19544	449 aa	Predicted RBP	10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	CPN2	P22792	545 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	SERPINB4	P48594	390 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	RPS18	P62269	152 aa	Known RBP	10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	ATP1A4	Q13733	1029 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	MINDY4	Q4G0A6	757 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	CPEB2	Q7Z5Q1	589 aa	Known RBP	10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	LGI4	Q8N135	537 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	TMEM132C	Q8N3T6	1108 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	ACOT4	Q8N9L9	421 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	PEX11G	Q96HA9	241 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	TEKT2	Q9UIF3	430 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	SOCS6	O14544	535 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	DPM1	O60762	260 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	RSL1D1	O76021	490 aa	Known RBP	10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	SERPINA7	P05543	415 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	COX7A2	P14406	83 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	MAPK1	P28482	360 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	ALDH3A1	P30838	453 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	PGD	P52209	483 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	PLA2G16	P53816	162 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	CDH13	P55290	713 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	DCAF10	Q5QP82	559 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	C6orf163	Q5TEZ5	329 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	ATG16L1	Q676U5	607 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	OR52E8	Q6IFG1	317 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	TCTN3	Q6NUS6	607 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	EXOC3L1	Q86VI1	746 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	PDSS2	Q86YH6	399 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	C10orf107	Q8IVU9	208 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	TLCD1	Q96CP7	247 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	MOCOS	Q96EN8	888 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	NSUN5	Q96P11	429 aa	Known RBP	10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	GATA5	Q9BWX5	397 aa	Predicted RBP	10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	VN1R1	Q9GZP7	353 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	VPS29	Q9UBQ0	182 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	MCM8	Q9UJA3	840 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	PSME2	Q9UL46	239 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	HS3ST3B1	Q9Y662	390 aa		10.09	□□□□□ -0.79
UBR4-208	ENST00000459947	ARGFX	A6NJG6	315 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	AZIN1	O14977	448 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	RGS14	O43566	566 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	CTNS	O60931	367 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	SPAG7	O75391	227 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	TGFB1	P01137	390 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	FGF4	P08620	206 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	GALNS	P34059	522 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	HK2	P52789	917 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	POLE2	P56282	527 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	OR4D2	P58180	307 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	LETMD1	Q6P1Q0	360 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	FAM9C	Q8IZT9	166 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	CDYL2	Q8N8U2	506 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	M1AP	Q8TC57	530 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	LHPP	Q9H008	270 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	KLHL31	Q9H511	634 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	LANCL2	Q9NS86	450 aa		10.08	□□□□□ -0.8
UBR4-208	ENST00000459947	FBXL4	Q9UKA2	621 aa		10.08	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms