RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CHRNEQ04844 493 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 OPCMLQ14982 345 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 PARP15Q460N3 678 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 SCGB2B2Q4G0G5 96 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 ZNF705AQ6ZN79 300 aaPredicted RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 IL31RAQ8NI17 732 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 NEIL3Q8TAT5 605 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 MYLIPQ8WY64 445 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 ARNTL2Q8WYA1 636 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 GIMAP5Q96F15 307 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 ABCG4Q9H172 646 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 LHX5Q9H2C1 402 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 GTF2IRD1Q9UHL9 959 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 SH2B3Q9UQQ2 575 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 ARL5AQ9Y689 179 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 EIF1AYO14602 144 aaKnown RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 PPP1R2P9O14990 202 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 ZNF821O75541 412 aaPredicted RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 SLC35G4P0C7Q5 338 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 MAOAP21397 527 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 EIF1AXP47813 144 aaKnown RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 PRKAG1P54619 331 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 ZACNQ401N2 412 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 GPR151Q8TDV0 419 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 PPCDCQ96CD2 204 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 VRK1Q99986 396 aaPredicted RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 GSX2Q9BZM3 304 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 SOX17Q9H6I2 414 aaPredicted RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 THUMPD1Q9NXG2 353 aaKnown RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 MS4A12Q9NXJ0 267 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 SMIM28A0A1B0GU29 152 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 TUBAL3A6NHL2 446 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 A8MUA0 341 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 TREHO43280 583 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 KERAO60938 352 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 SULT1C4O75897 302 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 C1QBP02746 253 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 ARL2P36404 184 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 MMP12P39900 470 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 RPL7AP62424 266 aaKnown RBP12.83□□□□□ -0.35
USP40-208ENST00000450966 TARDBPQ13148 414 aaKnown RBP eCLIP12.83□□□□□ -0.35
USP40-208ENST00000450966 TOR2AQ5JU69 321 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 ETFRF1Q6IPR1 90 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 NANOGP8Q6NSW7 305 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 FAM183BPQ6ZVS7 135 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 ZSWIM9Q86XI8 627 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 FCRL1Q96LA6 429 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 FCRL3Q96P31 734 aaPredicted RBP12.83□□□□□ -0.35
USP40-208ENST00000450966 IL4I1Q96RQ9 567 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 SYT4Q9H2B2 425 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 BOLA1Q9Y3E2 137 aa12.83□□□□□ -0.35
USP40-208ENST00000450966 NALCNQ8IZF0 1738 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 SIGLEC1Q9BZZ2 1709 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 IGKV6D-41A0A0C4DH26 115 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 BHLHE40O14503 412 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 SDC3O75056 442 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 NR0B1P51843 470 aaKnown RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 CDC20Q12834 499 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 SEMA5AQ13591 1074 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 RBM23Q86U06 439 aaKnown RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 MRPL41Q8IXM3 137 aaKnown RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 TSSK3Q96PN8 268 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 ARHGAP39Q9C0H5 1083 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 MCCC2Q9HCC0 563 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 INTS6Q9UL03 887 aaKnown RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 TIMM22Q9Y584 194 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 SOWAHBA6NEL2 793 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 ADAM23O75077 832 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 CHATP28329 748 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 HTR1EP28566 365 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 CLCN4P51793 760 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 RRAS2P62070 204 aaPredicted RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 CHRNA6Q15825 494 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 HIST2H3PS2Q5TEC6 136 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 STEAP3Q658P3 488 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 SMYD5Q6GMV2 418 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 NRARPQ7Z6K4 114 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 SLC44A3Q8N4M1 653 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 MALSU1Q96EH3 234 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 TM6SF2Q9BZW4 377 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 OR2S2Q9NQN1 319 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 EIF2B3Q9NR50 452 aaKnown RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 ZNF536O15090 1300 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 A0A1W2PQ09 198 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 A0A1W2PQL4 384 aaPredicted RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 CLDN24A6NM45 220 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 ZNF780AO75290 641 aaPredicted RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 EPOP01588 193 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 OR3A2P47893 321 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 YBEYP58557 167 aaPredicted RBP12.83□□□□□ -0.36
USP40-208ENST00000450966 VLDLRP98155 873 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 FAM214AQ32MH5 1076 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 LRRC37A5PQ49AS3 106 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 COQ5Q5HYK3 327 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 GPRC5BQ9NZH0 403 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 CACNG2Q9Y698 323 aa12.83□□□□□ -0.36
USP40-208ENST00000450966 FAM159BA6NKW6 160 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 LRRTM2O43300 516 aa12.82□□□□□ -0.36
USP40-208ENST00000450966 TPT1P13693 172 aaKnown RBP12.82□□□□□ -0.36
USP40-208ENST00000450966 SSTR2P30874 369 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms