RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	MECR	Q9BV79	373 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	ENKD1	Q9H0I2	346 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	OR2AG1	Q9H205	316 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	WDR26	Q9H7D7	661 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	TRIM39	Q9HCM9	518 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	SARS2	Q9NP81	518 aa	Known RBP	4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	LHX9	Q9NQ69	397 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	FGF21	Q9NSA1	209 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	KCTD5	Q9NXV2	234 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	TAS2R13	Q9NYV9	303 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	XPR1	Q9UBH6	696 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	FBLN5	Q9UBX5	448 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	SLC23A2	Q9UGH3	650 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZNHIT2	Q9UHR6	403 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	LNPEP	Q9UIQ6	1025 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	TRMT6	Q9UJA5	497 aa	Known RBP	4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	RUVBL2	Q9Y230	463 aa	Known RBP	4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	CDYL	Q9Y232	598 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	SLC17A4	Q9Y2C5	497 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	ACOT9	Q9Y305	439 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	PRKAB1	Q9Y478	270 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	PLEKHM1	Q9Y4G2	1056 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	COMMD10	Q9Y6G5	202 aa		4.57	□□□□□ -1.68
PTPN4-206	ENST00000441089	WDR91	A4D1P6	747 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	C7orf72	A4D263	438 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089		A6NL46	340 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089		E5RI56	91 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	UBXN8	O00124	270 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	CCL21	O00585	134 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PFDN6	O15212	129 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	TM9SF1	O15321	606 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	VEGFD	O43915	354 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	DLX3	O60479	287 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	GPC4	O75487	556 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	POP7	O75817	140 aa	Known RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	KIAA0754	O94854	1291 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZWINT	O95229	277 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	KCNH1	O95259	989 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	CLDN14	O95500	239 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PYGL	P06737	847 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	BPGM	P07738	259 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	HOXC4	P09017	264 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	OR56A5	P0C7T3	313 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	COL6A2	P12110	1019 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	MYCLP1	P12525	358 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	MTHFD2	P13995	350 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZNF28	P17035	718 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	TFEB	P19484	476 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PDHA2	P29803	388 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PBLD	P30039	288 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ALDH3A1	P30838	453 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ARRB2	P32121	409 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PPARG	P37231	505 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	SLC26A3	P40879	764 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	MDH1	P40925	334 aa	Known RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	MAZ	P56270	477 aa	Known RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	CBX1	P83916	185 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PPP2R2B	Q00005	443 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ILF2	Q12905	390 aa	Known RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ILF3	Q12906	894 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	NFE2L1	Q14494	772 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	TSN	Q15631	228 aa	Known RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PHKG1	Q16816	387 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PYCR3	Q53H96	274 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	FAM219B	Q5XKK7	198 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	MEX3B	Q6ZN04	569 aa	Known RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089		Q6ZS92	163 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	TBC1D1	Q86TI0	1168 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	C10orf107	Q8IVU9	208 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	SFTPA2	Q8IWL1	248 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ZBTB2	Q8N680	514 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ARFGAP2	Q8N6H7	521 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	OR56A4	Q8NGH8	313 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	OR6Y1	Q8NGX8	325 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	GRHL3	Q8TE85	626 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	CKAP2	Q8WWK9	683 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ELMO1	Q92556	727 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	INPP5D	Q92835	1189 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	KIAA1191	Q96A73	305 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PDXP	Q96GD0	296 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	SCYL1	Q96KG9	808 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	LINC00615	Q96LM1	132 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	TRAPPC9	Q96Q05	1148 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PANX3	Q96QZ0	392 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	SLX1A	Q9BQ83	275 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	CCM2	Q9BSQ5	444 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	GSDMC	Q9BYG8	508 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	DERL2	Q9GZP9	239 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	TMEM168	Q9H0V1	697 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	CCDC68	Q9H2F9	335 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	ALG9	Q9H6U8	611 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	CNOT10	Q9H9A5	744 aa	Known RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	NMRAL1	Q9HBL8	299 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	SYTL2	Q9HCH5	934 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	FGF22	Q9HCT0	170 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PDE7B	Q9NP56	450 aa		4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	PHPT1	Q9NRX4	125 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	CCM2L	Q9NUG4	571 aa	Predicted RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	SPATS2L	Q9NUQ6	558 aa	Known RBP	4.56	□□□□□ -1.68
PTPN4-206	ENST00000441089	INTS9	Q9NV88	658 aa	Known RBP	4.56	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms