RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MS4A8Q9BY19 250 aa14.28□□□□□ -0.12
LIMS3-201ENST00000437679 MRPL46Q9H2W6 279 aaKnown RBP14.28□□□□□ -0.12
LIMS3-201ENST00000437679 PSMC3IPQ9P2W1 217 aaPredicted RBP14.28□□□□□ -0.12
LIMS3-201ENST00000437679 TEKT2Q9UIF3 430 aa14.28□□□□□ -0.12
LIMS3-201ENST00000437679 VPS4AQ9UN37 437 aa14.28□□□□□ -0.12
LIMS3-201ENST00000437679 MRPS33Q9Y291 106 aaKnown RBP14.28□□□□□ -0.12
LIMS3-201ENST00000437679 MMACHCQ9Y4U1 282 aa14.28□□□□□ -0.12
LIMS3-201ENST00000437679 PCDHGA11Q9Y5H2 935 aa14.28□□□□□ -0.12
LIMS3-201ENST00000437679 PRRC2CQ9Y520 2896 aaKnown RBP14.28□□□□□ -0.12
LIMS3-201ENST00000437679 A8MUI8 341 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 E2F3O00716 465 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 CLDN4O14493 209 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 TGFB1P01137 390 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 MYBL2P10244 700 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 MAOAP21397 527 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 CERS1P27544 350 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 TNFRSF8P28908 595 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 TLR1Q15399 786 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 ABHD17BQ5VST6 288 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 CUZD1Q86UP6 607 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 LCA5Q86VQ0 697 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 CYP4X1Q8N118 509 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 HUS1BQ8NHY5 278 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 M1APQ8TC57 530 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 UBLCP1Q8WVY7 318 aaPredicted RBP14.27□□□□□ -0.13
LIMS3-201ENST00000437679 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.27□□□□□ -0.13
LIMS3-201ENST00000437679 MAGEB10Q96LZ2 347 aaPredicted RBP14.27□□□□□ -0.13
LIMS3-201ENST00000437679 CENPKQ9BS16 269 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 TBCDQ9BTW9 1192 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 EPB41L4BQ9H329 900 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 NOL11Q9H8H0 719 aaKnown RBP14.27□□□□□ -0.13
LIMS3-201ENST00000437679 KCNK13Q9HB14 408 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 MMP25Q9NPA2 562 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 PRDM7Q9NQW5 492 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 PRTFDC1Q9NRG1 225 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 CSAG2Q9Y5P2 127 aa14.27□□□□□ -0.13
LIMS3-201ENST00000437679 SHANK1Q9Y566 2161 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 H0YIV9 168 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 SH3BGRLO75368 114 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 ZIC2O95409 532 aaPredicted RBP14.26□□□□□ -0.13
LIMS3-201ENST00000437679 CLDN9O95484 217 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 PIK3CBP42338 1070 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 CCNG1P51959 295 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 RAP1GDS1P52306 607 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 LIM2P55344 173 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 ZNF33BQ06732 778 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 ZNF169Q14929 603 aaPredicted RBP14.26□□□□□ -0.13
LIMS3-201ENST00000437679 CPSF6Q16630 551 aaKnown RBP eCLIP14.26□□□□□ -0.13
LIMS3-201ENST00000437679 AP5B1Q2VPB7 878 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 PRR30Q53SZ7 412 aaPredicted RBP14.26□□□□□ -0.13
LIMS3-201ENST00000437679 KHDRBS2Q5VWX1 349 aaKnown RBP14.26□□□□□ -0.13
LIMS3-201ENST00000437679 B3GNTL1Q67FW5 361 aaPredicted RBP14.26□□□□□ -0.13
LIMS3-201ENST00000437679 ZNF595Q8IYB9 648 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 CISD2Q8N5K1 135 aaKnown RBP14.26□□□□□ -0.13
LIMS3-201ENST00000437679 L3MBTL4Q8NA19 623 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 GALNT11Q8NCW6 608 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 ACMSDQ8TDX5 336 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 ZNF354BQ96LW1 612 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 SLC29A3Q9BZD2 475 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 OR51B5Q9H339 312 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 DMRT3Q9NQL9 472 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 NECTIN3Q9NQS3 549 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 PLA2G3Q9NZ20 509 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 DAPP1Q9UN19 280 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 RNF11Q9Y3C5 154 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 TSC22D4Q9Y3Q8 395 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 PCDHGA10Q9Y5H3 936 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 SPACA6W5XKT8 324 aa14.26□□□□□ -0.13
LIMS3-201ENST00000437679 CPAMD8Q8IZJ3 1885 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 UBR5O95071 2799 aaPredicted RBP14.25□□□□□ -0.13
LIMS3-201ENST00000437679 IGKV3D-11A0A0A0MRZ8 115 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 TCRBV16S1A1N1A0A5B0 115 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 TAC1P20366 129 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 ATP5A1P25705 553 aaKnown RBP14.25□□□□□ -0.13
LIMS3-201ENST00000437679 SSR2P43308 183 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 HSD17B7P56937 341 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 SLC26A5P58743 744 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 TAS2R50P59544 299 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 SLC13A2Q13183 592 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 DEPDC1Q5TB30 811 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 UBE3DQ7Z6J8 389 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 AMER2Q8N7J2 671 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 ACOT4Q8N9L9 421 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 FAM47BQ8NA70 645 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 CATSPER1Q8NEC5 780 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 HAS2Q92819 552 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 RGMAQ96B86 450 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 SNRNP40Q96DI7 357 aaKnown RBP14.25□□□□□ -0.13
LIMS3-201ENST00000437679 MTERF1Q99551 399 aaKnown RBP14.25□□□□□ -0.13
LIMS3-201ENST00000437679 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.25□□□□□ -0.13
LIMS3-201ENST00000437679 LYRM4Q9HD34 91 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 STMN3Q9NZ72 180 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 ABI3Q9P2A4 366 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 TBK1Q9UHD2 729 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 PCTPQ9UKL6 214 aa14.25□□□□□ -0.13
LIMS3-201ENST00000437679 COPG1Q9Y678 874 aaKnown RBP14.25□□□□□ -0.13
LIMS3-201ENST00000437679 SPENQ96T58 3664 aaKnown RBP14.25□□□□□ -0.13
LIMS3-201ENST00000437679 ESPL1Q14674 2120 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 SYNDIG1LA6NDD5 238 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 SAGE2PA6NJ88 616 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms