RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MPSTP25325 297 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 RFX3P48380 749 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ENTPD1P49961 510 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 HSD17B7P56937 341 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 RNF130Q86XS8 419 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CMIPQ8IY22 773 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 SH2B3Q9UQQ2 575 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MMP10P09238 476 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 GPR153Q6NV75 609 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CD300LGQ6UXG3 332 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ASRGL1Q7L266 308 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ZSCAN4Q8NAM6 433 aaPredicted RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 ATP6V1C2Q8NEY4 427 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 RRNAD1Q96FB5 475 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 AHCYL2Q96HN2 611 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 PTCHD1Q96NR3 888 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MGLLQ99685 303 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 SLC32A1Q9H598 525 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 SPO11Q9Y5K1 396 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MON2Q7Z3U7 1717 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 UNC119BA6NIH7 251 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 SLC15A5A6NIM6 579 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 H0YGN5 161 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 FFAR2O15552 330 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 LALBAP00709 142 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ASPAP45381 313 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MARCH9Q86YJ5 346 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 GPR135Q8IZ08 494 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 KCNRGQ8N5I3 272 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 TEX13DA0A0J9YY54 714 aaPredicted RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 A0A1W2PQ45 241 aaPredicted RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 A0A1W2PQY0 241 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CXCL8P10145 99 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 NELFEP18615 380 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 NFYBP25208 207 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ABCG1P45844 678 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CCNJQ5T5M9 372 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 LIPJQ5W064 366 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 TMEM214Q6NUQ4 689 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 KIAA1324Q6UXG2 1013 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 COMMD1Q8N668 190 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 PIWIL1Q96J94 861 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 TMED9Q9BVK6 235 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ASB3Q9Y575 518 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 F8W036 122 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CASC3O15234 703 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 MC4RP32245 332 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 NUDT6P53370 316 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CDC42EP5Q6NZY7 148 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 SCIMPQ6UWF3 145 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CMTM1Q8IZ96 169 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 WACQ9BTA9 647 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 RNF24Q9Y225 148 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 RGS11O94810 467 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CHATP28329 748 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 TFAP2DQ7Z6R9 452 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ELP4Q96EB1 424 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 C5orf34Q96MH7 638 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MROQ9BYG7 248 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 SLC19A3Q9BZV2 496 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 HOXD1Q9GZZ0 328 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ABCB9Q9NP78 766 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ENPP5Q9UJA9 477 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CACNA1BQ00975 2339 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 LYRM1O43325 122 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 B3GALT2O43825 422 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 POP4O95707 220 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 FCGRTP55899 365 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 NOMO2Q5JPE7 1267 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 LGMNQ99538 433 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 TDRD3Q9H7E2 651 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 CEP290O15078 2479 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 TLR5O60602 858 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 HSPA7P48741 367 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 IDH3GP51553 393 aaPredicted RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 NIPAL4Q0D2K0 466 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 C4orf17Q53FE4 359 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MOB1BQ7L9L4 216 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MCEMP1Q8IX19 187 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 EXTL2Q9UBQ6 330 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 HIF3AQ9Y2N7 669 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 SCN9AQ15858 1988 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 RBM39Q14498 530 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 NTRK2Q16620 822 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MAP1SQ66K74 1059 aaPredicted RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 UQCC3Q6UW78 93 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CAMKVQ8NCB2 501 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 METTL21AQ8WXB1 218 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 FCRL3Q96P31 734 aaPredicted RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 GOT1P17174 413 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 GBE1Q04446 702 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 MRPL49Q13405 166 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 BTG3Q14201 252 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 RAET1EQ8TD07 263 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 GNPDA2Q8TDQ7 276 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 CANT1Q8WVQ1 401 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ARNTL2Q8WYA1 636 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 B3GNT5Q9BYG0 378 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 ELOA3DA6NLF2 546 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 MMP2P08253 660 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms