RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-205	ENST00000433888	ST6GALNAC6	Q969X2	333 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	HDAC11	Q96DB2	347 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	PHYHIPL	Q96FC7	376 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	OTUB1	Q96FW1	271 aa	Predicted RBP	2.55	□□□□□ -2
PTPN4-205	ENST00000433888	BTBD9	Q96Q07	612 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	FZD8	Q9H461	694 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	ACTL8	Q9H568	366 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	ANKZF1	Q9H8Y5	726 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	PFDN4	Q9NQP4	134 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	SEPT10	Q9P0V9	454 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	KLK11	Q9UBX7	282 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	SLC24A2	Q9UI40	661 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	PILRB	Q9UKJ0	227 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	ABCC9	O60706	1549 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	NPHP3	Q7Z494	1330 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	TRAV24	A0A0B4J272	114 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	hCG_38984	A0A1B0GV85	526 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	HDAC3	O15379	428 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	MAGEB2	O15479	319 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	SLC4A1	P02730	911 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	MT-ND3	P03897	115 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	GBA	P04062	536 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	RPLP0	P05388	317 aa	Known RBP	2.54	□□□□□ -2
PTPN4-205	ENST00000433888	FYN	P06241	537 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	HSP90AB1	P08238	724 aa	Known RBP	2.54	□□□□□ -2
PTPN4-205	ENST00000433888	FAM58BP	P0C7Q3	252 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	TCF4	P15884	667 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	C4BPB	P20851	252 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	CETN2	P41208	172 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	ASCL1	P50553	236 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	ITPK1	Q13572	414 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	ZNF273	Q14593	569 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	LASP1	Q14847	261 aa	Known RBP	2.54	□□□□□ -2
PTPN4-205	ENST00000433888	PKN2	Q16513	984 aa	Known RBP	2.54	□□□□□ -2
PTPN4-205	ENST00000433888	TAZ	Q16635	292 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	CCDC158	Q5M9N0	1113 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	PLBD1	Q6P4A8	553 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	EMB	Q6PCB8	327 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	IYD	Q6PHW0	289 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	ADCK2	Q7Z695	626 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	VASH2	Q86V25	355 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	HOOK3	Q86VS8	718 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	TUSC5	Q8IXB3	177 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	SPC24	Q8NBT2	197 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	UXS1	Q8NBZ7	420 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	TSPAN14	Q8NG11	270 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	AFAP1L1	Q8TED9	768 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	GRK7	Q8WTQ7	553 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	RSPH1	Q8WYR4	309 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	CORO2A	Q92828	525 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	CASP10	Q92851	521 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	PTP4A1	Q93096	173 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	CABS1	Q96KC9	395 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	NEDD4L	Q96PU5	975 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	RAB3IP	Q96QF0	476 aa	Predicted RBP	2.54	□□□□□ -2
PTPN4-205	ENST00000433888	NDN	Q99608	321 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	CPNE1	Q99829	537 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	CACNG6	Q9BXT2	260 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	SDCBP2	Q9H190	292 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	MARCH7	Q9H992	704 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	IL17C	Q9P0M4	197 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888		Q9UF83	564 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	ARMCX3	Q9UH62	379 aa	Predicted RBP	2.54	□□□□□ -2
PTPN4-205	ENST00000433888	IL36A	Q9UHA7	158 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	DDX25	Q9UHL0	483 aa	Known RBP	2.54	□□□□□ -2
PTPN4-205	ENST00000433888	FBXL4	Q9UKA2	621 aa		2.54	□□□□□ -2
PTPN4-205	ENST00000433888	TRGV8	A0A0C4DH27	118 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	TCRBV21S2A2	A0A5A6	115 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	TNFSF12	O43508	249 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	ADAR	P55265	1226 aa	Known RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	RBPJ	Q06330	500 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	ACTN3	Q08043	901 aa	Predicted RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	CYLC2	Q14093	348 aa	Predicted RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	NONO	Q15233	471 aa	Known RBP eCLIP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	NHLRC3	Q5JS37	347 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	ZNF506	Q5JVG8	444 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	ARMC4	Q5T2S8	1044 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	ALKBH5	Q6P6C2	394 aa	Known RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	TMEM270	Q6UE05	265 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	PRSS55	Q6UWB4	352 aa	Predicted RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	GBP6	Q6ZN66	633 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	TMEM182	Q6ZP80	229 aa	Predicted RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	ERN2	Q76MJ5	926 aa	Known RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	SPATA19	Q7Z5L4	167 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	CNPY4	Q8N129	248 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	FLVCR1-AS1	Q8TAF5	88 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	FIBIN	Q8TAL6	211 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	PROX1	Q92786	737 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	TSACC	Q96A04	125 aa	Predicted RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	SPSB1	Q96BD6	273 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	BSCL2	Q96G97	398 aa	Predicted RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	TMEM237	Q96Q45	408 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	PRAM1	Q96QH2	718 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	FERMT1	Q9BQL6	677 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	MRPL9	Q9BYD2	267 aa	Known RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	NOL11	Q9H8H0	719 aa	Known RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	MOB1A	Q9H8S9	216 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888	ARGLU1	Q9NWB6	273 aa	Predicted RBP	2.53	□□□□□ -2
PTPN4-205	ENST00000433888	FETUB	Q9UGM5	382 aa		2.53	□□□□□ -2
PTPN4-205	ENST00000433888		A0A0A6YYC8	382 aa	Predicted RBP	2.52	□□□□□ -2.01

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms