RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 RUNX2Q13950 521 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 DEPDC1Q5TB30 811 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 PCSK4Q6UW60 755 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 ZCCHC23Q6ZST2 131 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 CHSY3Q70JA7 882 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 SRFBP1Q8NEF9 429 aaKnown RBP11.77□□□□□ -0.53
SKA1-203ENST00000417656 SELENOMQ8WWX9 145 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 TBC1D20Q96BZ9 403 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 C8orf44Q96CB5 159 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 OR1F2PQ96R84 312 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 SERINC2Q96SA4 455 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 CSF3RQ99062 836 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 TBCDQ9BTW9 1192 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 TRIM55Q9BYV6 548 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 SHCBP1LQ9BZQ2 653 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 STMN4Q9H169 189 aaPredicted RBP11.77□□□□□ -0.53
SKA1-203ENST00000417656 TNFRSF12AQ9NP84 129 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 PRDM7Q9NQW5 492 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 FBXL4Q9UKA2 621 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 RALYQ9UKM9 306 aaKnown RBP11.77□□□□□ -0.53
SKA1-203ENST00000417656 SNX6Q9UNH7 406 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 NBEAQ8NFP9 2946 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 CACNA1GO43497 2377 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 SCN2AQ99250 2005 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 FAM227AF5H4B4 570 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 AGPSO00116 658 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 PSMD12O00232 456 aaPredicted RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 FOXE1O00358 373 aaPredicted RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 PEX12O00623 359 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 B4GALT2O60909 372 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 SCELO95171 688 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 KRT6AP02538 564 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 KRT6BP04259 564 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 BPGMP07738 259 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 FAM87AP0C7U9 286 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 ACPPP15309 386 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 HIST1H1TP22492 207 aaPredicted RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 ATP5A1P25705 553 aaKnown RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 PTX3P26022 381 aaPredicted RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 SERPINB4P48594 390 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 KRT6CP48668 564 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 FOXA1P55317 472 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 POLE2P56282 527 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 RAB38P57729 211 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 NAA20P61599 178 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 RHAGQ02094 409 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 ASPHQ12797 758 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 CUL3Q13618 768 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 MPP2Q14168 576 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 AP5B1Q2VPB7 878 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 TUBB8Q3ZCM7 444 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 C10orf62Q5T681 223 aaPredicted RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 KIRREL2Q6UWL6 708 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 LANCL3Q6ZV70 420 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 ACOT4Q8N9L9 421 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 FAM47BQ8NA70 645 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 METTL6Q8TCB7 284 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 APOBEC4Q8WW27 367 aaKnown RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 TSLPQ969D9 159 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 RGMAQ96B86 450 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 TLCD1Q96CP7 247 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 IP6K3Q96PC2 410 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 UBL7Q96S82 380 aaPredicted RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 SERPINI1Q99574 410 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 ARHGAP9Q9BRR9 750 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 CENPKQ9BS16 269 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 NPLQ9BXD5 320 aaPredicted RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 ZNF717Q9BY31 904 aaPredicted RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 ROGDIQ9GZN7 287 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 CLK4Q9HAZ1 481 aaKnown RBP11.76□□□□□ -0.53
SKA1-203ENST00000417656 KCNK9Q9NPC2 374 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 PPT2Q9UMR5 302 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 SLC12A4Q9UP95 1085 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 TIMM22Q9Y584 194 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 ZFYVE26Q68DK2 2539 aa11.76□□□□□ -0.53
SKA1-203ENST00000417656 TM9SF1O15321 606 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 EEDO75530 441 aaKnown RBP11.75□□□□□ -0.53
SKA1-203ENST00000417656 CRCPO75575 148 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 SEMA3DO95025 777 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 ZWINTO95229 277 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 CHRNGP07510 517 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 C8orf89P0DMQ9 161 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 COX6A1P12074 109 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 IL10P22301 178 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 JAK1P23458 1154 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 BSGP35613 385 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 HNRNPFP52597 415 aaKnown RBP11.75□□□□□ -0.53
SKA1-203ENST00000417656 LIM2P55344 173 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 MAGOHP61326 146 aaKnown RBP11.75□□□□□ -0.53
SKA1-203ENST00000417656 DCAF10Q5QP82 559 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 OR4C11Q6IEV9 310 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 HDXQ7Z353 690 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 NUDT13Q86X67 352 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 APLFQ8IW19 511 aaPredicted RBP11.75□□□□□ -0.53
SKA1-203ENST00000417656 ANKRD42Q8N9B4 389 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 TMEM52Q8NDY8 209 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 OR11G2Q8NGC1 345 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 ADAMTS18Q8TE60 1221 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 MAPKAP1Q9BPZ7 522 aa11.75□□□□□ -0.53
SKA1-203ENST00000417656 MRPL1Q9BYD6 325 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms