RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 NPLQ9BXD5 320 aaPredicted RBP17.86■□□□□ 0.45
SF3A1-202ENST00000411423 TXLNGYQ9BZA5 131 aa17.86■□□□□ 0.45
SF3A1-202ENST00000411423 RNF32Q9H0A6 362 aa17.86■□□□□ 0.45
SF3A1-202ENST00000411423 TSPYL1Q9H0U9 437 aa17.86■□□□□ 0.45
SF3A1-202ENST00000411423 EPB41L4BQ9H329 900 aa17.86■□□□□ 0.45
SF3A1-202ENST00000411423 STMN3Q9NZ72 180 aa17.86■□□□□ 0.45
SF3A1-202ENST00000411423 KCMF1Q9P0J7 381 aa17.86■□□□□ 0.45
SF3A1-202ENST00000411423 CPSF2Q9P2I0 782 aaKnown RBP17.86■□□□□ 0.45
SF3A1-202ENST00000411423 USP9XQ93008 2570 aaPredicted RBP17.86■□□□□ 0.45
SF3A1-202ENST00000411423 HECTD1Q9ULT8 2610 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 MYOCOSA0A1B0GUC4 107 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 SAGE2PA6NJ88 616 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 SYCE1LA8MT33 242 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 TRIM49D1C9J1S8 452 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 PSMD12O00232 456 aaPredicted RBP17.85■□□□□ 0.45
SF3A1-202ENST00000411423 SAP18O00422 153 aaKnown RBP17.85■□□□□ 0.45
SF3A1-202ENST00000411423 WISP2O76076 250 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 TGFB1P01137 390 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 SBK3P0C264 359 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 PCNAP12004 261 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 GFAPP14136 432 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 ALDH18A1P54886 795 aaKnown RBP17.85■□□□□ 0.45
SF3A1-202ENST00000411423 PCBP2Q15366 365 aaKnown RBP eCLIP17.85■□□□□ 0.45
SF3A1-202ENST00000411423 PAGE2BQ5JRK9 111 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 ACER2Q5QJU3 275 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 ABHD17BQ5VST6 288 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 GRHL2Q6ISB3 625 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 RPUSD3Q6P087 351 aaKnown RBP17.85■□□□□ 0.45
SF3A1-202ENST00000411423 MED27Q6P2C8 311 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 TRIM40Q6P9F5 258 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 GOLGA7Q7Z5G4 137 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 SIGLEC12Q96PQ1 595 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 SERINC2Q96SA4 455 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 SLC29A3Q9BZD2 475 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 OR51B5Q9H339 312 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 ANKRD10Q9NXR5 420 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 DAPP1Q9UN19 280 aa17.85■□□□□ 0.45
SF3A1-202ENST00000411423 CNTRLQ7Z7A1 2325 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 DOPEY2Q9Y3R5 2298 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 A0A087WUV0 522 aaPredicted RBP17.84■□□□□ 0.45
SF3A1-202ENST00000411423 OR5H15A6NDH6 313 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 RIPK2O43353 540 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 B3GALT2O43825 422 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 UQCRHP07919 91 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 EPB42P16452 691 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 SERPINB9P50453 376 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 ZNF468Q5VIY5 522 aaPredicted RBP17.84■□□□□ 0.45
SF3A1-202ENST00000411423 ZNF324BQ6AW86 544 aaPredicted RBP17.84■□□□□ 0.45
SF3A1-202ENST00000411423 CLNKQ7Z7G1 428 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 TMEM151AQ8N4L1 468 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 PRR7Q8TB68 274 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 FAR1Q8WVX9 515 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 NSUN5Q96P11 429 aaKnown RBP17.84■□□□□ 0.45
SF3A1-202ENST00000411423 MAPKAP1Q9BPZ7 522 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 HES7Q9BYE0 225 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.84■□□□□ 0.45
SF3A1-202ENST00000411423 XPR1Q9UBH6 696 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 ZNF180Q9UJW8 692 aa17.84■□□□□ 0.45
SF3A1-202ENST00000411423 ZNF223Q9UK11 482 aaPredicted RBP17.84■□□□□ 0.45
SF3A1-202ENST00000411423 TRAV17A0A0B4J275 112 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 CCDC189A1A4V9 331 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 BLACEA4D250 179 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 OR7A17O14581 309 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 MYBL2P10244 700 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 ATP5A1P25705 553 aaKnown RBP17.83■□□□□ 0.44
SF3A1-202ENST00000411423 MTTPP55157 894 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 AP2B1P63010 937 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 TUBA3CQ13748 450 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 GTF2H2Q13888 395 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 HIST2H2ACQ16777 129 aaPredicted RBP17.83■□□□□ 0.44
SF3A1-202ENST00000411423 FHL5Q5TD97 284 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 HIST2H2AA3Q6FI13 130 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 GTF2H2CQ6P1K8 395 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 TUBA3EQ6PEY2 450 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 RPS27LQ71UM5 84 aaKnown RBP17.83■□□□□ 0.44
SF3A1-202ENST00000411423 PTGR2Q8N8N7 351 aaPredicted RBP17.83■□□□□ 0.44
SF3A1-202ENST00000411423 APCDD1LQ8NCL9 501 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 MDS2Q8NDY4 140 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 HUS1BQ8NHY5 278 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 TRIM44Q96DX7 344 aaPredicted RBP17.83■□□□□ 0.44
SF3A1-202ENST00000411423 PHF21BQ96EK2 531 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 ZNF354BQ96LW1 612 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 PSMG3-AS1Q96PY0 264 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 CDK15Q96Q40 435 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 CDCP1Q9H5V8 836 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 ZBTB26Q9HCK0 441 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 PRTFDC1Q9NRG1 225 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 RNF11Q9Y3C5 154 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 MMACHCQ9Y4U1 282 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 ESPL1Q14674 2120 aa17.83■□□□□ 0.44
SF3A1-202ENST00000411423 UTP20O75691 2785 aaKnown RBP17.82■□□□□ 0.44
SF3A1-202ENST00000411423 A0A1B0GTL3 188 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 ANKUB1A6NFN9 424 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 ETHE1O95571 254 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 ABHD2P08910 425 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 EEF1DP29692 281 aaKnown RBP17.82■□□□□ 0.44
SF3A1-202ENST00000411423 CD96P40200 585 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 PIK3CGP48736 1102 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 TDGF1P3P51864 188 aa17.82■□□□□ 0.44
SF3A1-202ENST00000411423 PMP22Q01453 160 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms