RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 LSSP48449 732 aa12.99□□□□□ -0.33
USP49-203ENST00000394253 EEFSECP57772 596 aaKnown RBP12.99□□□□□ -0.33
USP49-203ENST00000394253 DSTNP60981 165 aa12.99□□□□□ -0.33
USP49-203ENST00000394253 AGAP7PQ5VUJ5 663 aa12.99□□□□□ -0.33
USP49-203ENST00000394253 AGAP6Q5VW22 663 aa12.99□□□□□ -0.33
USP49-203ENST00000394253 TIGD3Q6B0B8 471 aa12.99□□□□□ -0.33
USP49-203ENST00000394253 DCUN1D4Q92564 292 aa12.99□□□□□ -0.33
USP49-203ENST00000394253 AGAP4Q96P64 663 aa12.99□□□□□ -0.33
USP49-203ENST00000394253 ZNF230Q9UIE0 474 aaPredicted RBP12.99□□□□□ -0.33
USP49-203ENST00000394253 ARPC5O15511 151 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 HDCP19113 662 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 UGT3A2Q3SY77 523 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 SSX7Q7RTT5 188 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 TM9SF4Q92544 642 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 PMEPA1Q969W9 287 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 CDK15Q96Q40 435 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 FDXACB1Q9BRP7 624 aaPredicted RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 MPPED1O15442 326 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 GINS1Q14691 196 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 EML3Q32P44 896 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 OR4K2Q8NGD2 314 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 RBMXL1Q96E39 390 aaKnown RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 LRFN5Q96NI6 719 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 CADM1Q9BY67 442 aaKnown RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 NPC1O15118 1278 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 PI15O43692 258 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 HLA-HP01893 362 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 ETV5P41161 510 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 KCNC1P48547 511 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 MMP14P50281 582 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 ZNF84P51523 738 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 ARL6IP1Q15041 203 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 BTN2A3PQ96KV6 586 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 ACTRT3Q9BYD9 372 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 AMBNQ9NP70 447 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 BACE2Q9Y5Z0 518 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 CHEK1O14757 476 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 RPS3AP61247 264 aaKnown RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 COTL1Q14019 142 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 CD163Q86VB7 1156 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 NPLOC4Q8TAT6 608 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 H3BSA7 217 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 RNF13O43567 381 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 PIRTP0C851 137 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 CD97P48960 835 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 RPS14P62263 151 aaKnown RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 HLFQ16534 295 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 PHF13Q86YI8 300 aaPredicted RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 ZDHHC1Q8WTX9 485 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 SLC6A17Q9H1V8 727 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 C1orf21Q9H246 121 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 PRDM12Q9H4Q4 367 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 ERVK13-1Q9NX77 482 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 RNF181Q9P0P0 153 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 PCDHGA6Q9Y5G7 932 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 RECQL4O94761 1208 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 PROZP22891 400 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 WNT3AP56704 352 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 HNRNPKP61978 463 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP49-203ENST00000394253 RPS27AP62979 156 aaKnown RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 UBA52P62987 128 aaKnown RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 SLC10A1Q14973 349 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 CCBE1Q6UXH8 406 aaPredicted RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 GDPD1Q8N9F7 314 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 TRUB1Q8WWH5 349 aaKnown RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 GCDHQ92947 438 aaPredicted RBP12.98□□□□□ -0.33
USP49-203ENST00000394253 UPRTQ96BW1 309 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 ANKRD28O15084 1053 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 MALLQ13021 153 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 DECR1Q16698 335 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 LIPKQ5VXJ0 399 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 TMBIM1Q969X1 311 aa12.98□□□□□ -0.33
USP49-203ENST00000394253 CADP27708 2225 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 C9J4A7 227 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 CLIC1O00299 241 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 BCL2L15Q5TBC7 163 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 FSTL4Q6MZW2 842 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 B3GLCTQ6Y288 498 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 TBC1D16Q8TBP0 767 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 MTERF1Q99551 399 aaKnown RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 SLC38A3Q99624 504 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 BANF1O75531 89 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 HSPA7P48741 367 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 CX3CR1P49238 355 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 CAV2P51636 162 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 HNRNPFP52597 415 aaKnown RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 PLGLAQ15195 96 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 TAS1R3Q7RTX0 852 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 NUDT13Q86X67 352 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 ZFPM1Q8IX07 1006 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 SCML4Q8N228 414 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 NLGN2Q8NFZ4 835 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 SMPDL3AQ92484 453 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 PKP4Q99569 1192 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 PLA2G12BQ9BX93 195 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 GPN2Q9H9Y4 310 aaPredicted RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 FZD4Q9ULV1 537 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 CNTN6Q9UQ52 1028 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 CACNA1BQ00975 2339 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 ONECUT3O60422 494 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms