RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 GRPEL2Q8TAA5 225 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 TRMT61AQ96FX7 289 aaKnown RBP20.25■□□□□ 0.83
UPF3A-202ENST00000375299 ZFYVE19Q96K21 471 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 BRF2Q9HAW0 419 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 RANGRFQ9HD47 186 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-202ENST00000375299 FZD3Q9NPG1 666 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 PRAMEF33A0A0G2JMD5 474 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 PRAMEF10O60809 474 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 ENTPD6O75354 484 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 GASTP01350 101 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 SLC10A3P09131 477 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 CKMT1AP12532 417 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 MAPK8P45983 427 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 CDH18Q13634 790 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 E2F2Q14209 437 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 ZNF385BQ569K4 471 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 PLEKHS1Q5SXH7 462 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 GRHL2Q6ISB3 625 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 RETSATQ6NUM9 610 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 PRSS55Q6UWB4 352 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-202ENST00000375299 THOC6Q86W42 341 aaKnown RBP20.24■□□□□ 0.83
UPF3A-202ENST00000375299 APCDD1Q8J025 514 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 HJURPQ8NCD3 748 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-202ENST00000375299 TRIM63Q969Q1 353 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 LYSMD1Q96S90 227 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 SLC35A5Q9BS91 424 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 NMNAT1Q9HAN9 279 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-202ENST00000375299 TRPM5Q9NZQ8 1165 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 NUFIP1Q9UHK0 495 aaKnown RBP20.24■□□□□ 0.83
UPF3A-202ENST00000375299 STOML2Q9UJZ1 356 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 ARRDC5A6NEK1 342 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 CCDC182A6NF36 153 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 H0YIV9 168 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 POU1F1P28069 291 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 ACLYP53396 1101 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 HBA1P69905 142 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 SPHARQ15513 63 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 DGKKQ5KSL6 1271 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 LAS2Q8IYD9 372 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 GOT1L1Q8NHS2 421 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-202ENST00000375299 ASIC4Q96FT7 647 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 RIPOR3Q96MK2 946 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 FYTTD1Q96QD9 318 aaKnown RBP20.24■□□□□ 0.83
UPF3A-202ENST00000375299 BHLHE41Q9C0J9 482 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-202ENST00000375299 SGK2Q9HBY8 427 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 TMEM161AQ9NX61 479 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 CLEC2DQ9UHP7 191 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 ENPP4Q9Y6X5 453 aa20.24■□□□□ 0.83
UPF3A-202ENST00000375299 HYKKA2RU49 373 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 CSNK1DP48730 415 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 LARS2Q15031 903 aaKnown RBP20.23■□□□□ 0.83
UPF3A-202ENST00000375299 GLYR1Q49A26 553 aaPredicted RBP20.23■□□□□ 0.83
UPF3A-202ENST00000375299 CCDC58Q4VC31 144 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 MEDAGQ5VYS4 303 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 ADNP2Q6IQ32 1131 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 RDH10Q8IZV5 341 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 SLC34A3Q8N130 599 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 VWA5B2Q8N398 1253 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 FBXO22Q8NEZ5 403 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 TMEM80Q96HE8 168 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 DHRS1Q96LJ7 313 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 TMEM38AQ9H6F2 299 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 A0A1W2PQ67 120 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 FADS2P1A8MWK0 482 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 TLR4O00206 839 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 CYP17A1P05093 508 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 ELNP15502 786 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 TGM4P49221 684 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 SLC11A1P49279 550 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 GATMP50440 423 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 DAB2P98082 770 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 CDK6Q00534 326 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 KCNC3Q14003 757 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 Q5BKY6 102 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 CRB2Q5IJ48 1285 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 FAM131AQ6UXB0 335 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 RFLNAQ6ZTI6 216 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 TPRG1Q6ZUI0 275 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 GPR156Q8NFN8 814 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 OR4K1Q8NGD4 311 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 KLHL6Q8WZ60 621 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 IL4I1Q96RQ9 567 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 C2orf49Q9BVC5 232 aaPredicted RBP20.23■□□□□ 0.83
UPF3A-202ENST00000375299 PRM3Q9NNZ6 103 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 C11orf16Q9NQ32 467 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 NDUFB11Q9NX14 153 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 HCSTQ9UBK5 93 aa20.23■□□□□ 0.83
UPF3A-202ENST00000375299 EXO1Q9UQ84 846 aaKnown RBP20.23■□□□□ 0.83
UPF3A-202ENST00000375299 DSPPQ9NZW4 1301 aa20.22■□□□□ 0.83
UPF3A-202ENST00000375299 GNG14A0A1W2PPG7 69 aa20.22■□□□□ 0.83
UPF3A-202ENST00000375299 ADAM12O43184 909 aa20.22■□□□□ 0.83
UPF3A-202ENST00000375299 IFNA14P01570 189 aa20.22■□□□□ 0.83
UPF3A-202ENST00000375299 HMGA1P17096 107 aaKnown RBP20.22■□□□□ 0.83
UPF3A-202ENST00000375299 ITGB7P26010 798 aa20.22■□□□□ 0.83
UPF3A-202ENST00000375299 SERPINA4P29622 427 aa20.22■□□□□ 0.83
UPF3A-202ENST00000375299 TIA1P31483 386 aaKnown RBP eCLIP20.22■□□□□ 0.83
UPF3A-202ENST00000375299 EEF1A2Q05639 463 aaKnown RBP20.22■□□□□ 0.83
UPF3A-202ENST00000375299 FOXD4Q12950 439 aaPredicted RBP20.22■□□□□ 0.83
UPF3A-202ENST00000375299 SPIN4Q56A73 249 aa20.22■□□□□ 0.83
UPF3A-202ENST00000375299 OXR1Q8N573 874 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms