RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ELOCQ15369 112 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 MTX3Q5HYI7 312 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ERMP1Q7Z2K6 904 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 PTOV1Q86YD1 416 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ZZZ3Q8IYH5 903 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 TBC1D19Q8N5T2 526 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 TM4SF19Q96DZ7 209 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 NAF1Q96HR8 494 aaKnown RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 DPH2Q9BQC3 489 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ANAPC2Q9UJX6 822 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 WBP11Q9Y2W2 641 aaKnown RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 PCDHGA2Q9Y5H1 932 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ENTPD2Q9Y5L3 495 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 SNX11Q9Y5W9 270 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 TMEM131Q92545 1883 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 OR5K3A6NET4 321 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 WASHC1A8K0Z3 465 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 EVPLLA8MZ36 301 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 NOBOXO60393 691 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 TPST1O60507 370 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 PRKRAO75569 313 aaKnown RBP13.1□□□□□ -0.31
PTPRF-202ENST00000372405 FAM58BPP0C7Q3 252 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 ACADSP16219 412 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 ALDH9A1P49189 494 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 RAB8AP61006 207 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 LRRC74AQ0VAA2 488 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 HEPACAMQ14CZ8 416 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 NKG7Q16617 165 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 SLC5A12Q1EHB4 618 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 GRAMD1BQ3KR37 738 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 CMPK2Q5EBM0 449 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 MRM1Q6IN84 353 aaKnown RBP13.1□□□□□ -0.31
PTPRF-202ENST00000372405 TLDC1Q6P9B6 456 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.1□□□□□ -0.314e-6■■■■■ 36.3
PTPRF-202ENST00000372405 ARL14Q8N4G2 192 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 ACOT4Q8N9L9 421 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 NETO1Q8TDF5 533 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 KCNC2Q96PR1 638 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 EFHD1Q9BUP0 239 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 DUSP15Q9H1R2 295 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-202ENST00000372405 AGPAT4Q9NRZ5 378 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 ZNF282Q9UDV7 671 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-202ENST00000372405 VPS4AQ9UN37 437 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 ASB4Q9Y574 426 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 AK5Q9Y6K8 562 aa13.1□□□□□ -0.31
PTPRF-202ENST00000372405 PCDH15Q96QU1 1955 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 LOC105369274A0A096LPK9 316 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 LOC102723532A0A0G2JNH3 316 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 A0A0J9YVX5 310 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 A0A1W2PRB8 838 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 FAM149AA5PLN7 773 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 GSTA4O15217 222 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 CREG1O75629 220 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 MT-ND1P03886 318 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 RPSAP08865 295 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 NUDT7P0C024 238 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 UMPSP11172 480 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TYRP1P17643 537 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 CERS1P27544 350 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 PCBP4P57723 403 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TRA2BP62995 288 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ZXDAP98168 799 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 SLAMF1Q13291 335 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 FRMPD2BQ6IN97 320 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ZCCHC8Q6NZY4 707 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ENPP6Q6UWR7 440 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 MAMSTRQ6ZN01 415 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ASPGQ86U10 573 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 OR4N4Q8N0Y3 316 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ADCY4Q8NFM4 1077 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TNIP2Q8NFZ5 429 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 OR52E4Q8NGH9 312 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 BAHD1Q8TBE0 780 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 NT5CQ8TCD5 201 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 SEPHS2Q99611 448 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TMEM121BQ9BXQ6 578 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 UCKL1Q9NWZ5 548 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TAS2R9Q9NYW1 312 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ACSL6Q9UKU0 697 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 DTNAQ9Y4J8 743 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TECTAO75443 2155 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 A0A1W2PR48 441 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 VILLO15195 856 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 HNRNPRO43390 633 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 SDC3O75056 442 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 SCELO95171 688 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 NTRK1P04629 796 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 IL10P22301 178 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 FRKP42685 505 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 GSTM5P46439 218 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 FASLGP48023 281 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ARFIP1P53367 373 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 RGNQ15493 299 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 COX20Q5RI15 118 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 NDUFAF5Q5TEU4 345 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 CPZQ66K79 652 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TRIM40Q6P9F5 258 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 C17orf82Q86X59 251 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms