RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ATP6V1G1O75348 118 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 RGS11O94810 467 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SEC24DO94855 1032 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 HAUS5O94927 633 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SNAI1O95863 264 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 DHRS4L1P0CG22 281 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PRKCHP24723 683 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ID1P41134 155 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SLC6A8P48029 635 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 DLG4P78352 724 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TFF2Q03403 129 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ZCWPW2Q504Y3 356 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 HYIQ5T013 277 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TMEM17Q86X19 198 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 MISPQ8IVT2 679 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CNTN4Q8IWV2 1026 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CPNE9Q8IYJ1 553 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 MUC15Q8N387 334 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 FAM26EQ8N5C1 309 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TRAM1L1Q8N609 369 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 OR4K14Q8NGD5 310 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 OR1J4Q8NGS1 313 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ZNF606Q8WXB4 792 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 NSL1Q96IY1 281 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PSMB7Q99436 277 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ZFYVE21Q9BQ24 234 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CHST8Q9H2A9 424 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 VIPAS39Q9H9C1 493 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 C2orf42Q9NWW7 574 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 C5AR2Q9P296 337 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 FCF1Q9Y324 198 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 NEUROG3Q9Y4Z2 214 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 A0A1B0GVI7 797 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 H0YAE9 185 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 NDUFS4O43181 175 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TIMM8AO60220 97 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 LCA5LO95447 670 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ZCCHC18P0CG32 403 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 G6PDP11413 515 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PSKH1P11801 424 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CD79AP11912 226 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ITGB7P26010 798 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ARF3P61204 181 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 CDK10Q15131 360 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CRTC2Q53ET0 693 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 ZNF542PQ5EBM4 170 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CPTPQ5TA50 214 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ADNP2Q6IQ32 1131 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SLC27A4Q6P1M0 643 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 BNC2Q6ZN30 1099 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 NPAS3Q8IXF0 933 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 NAGSQ8N159 534 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 RTL3Q8N8U3 475 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 ZNF441Q8N8Z8 693 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 IL17DQ8TAD2 202 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TRPC4APQ8TEL6 797 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PSD2Q9BQI7 771 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CPPED1Q9BRF8 314 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 NRSN2Q9GZP1 204 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 DDX31Q9H8H2 851 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 HES4Q9HCC6 221 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ACSS1Q9NUB1 689 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 TBCCD1Q9NVR7 557 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PSMC3IPQ9P2W1 217 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 REREQ9P2R6 1566 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 A1L4Q6 167 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 RNF103O00237 685 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SNAP91O60641 907 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 OR4F21O95013 312 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SFTPBP07988 381 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 RAC2P15153 192 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 UGT2B15P54855 530 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PLA2G7Q13093 441 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 OR4F3Q6IEY1 312 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 OR52E8Q6IFG1 317 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PODNL1Q6PEZ8 512 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TPRA1Q86W33 373 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ANKMY2Q8IV38 441 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 RASGEF1CQ8N431 466 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 MBOAT4Q96T53 435 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 GDF15Q99988 308 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ARPC5LQ9BPX5 153 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 UCK2Q9BZX2 261 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 LHPPQ9H008 270 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PDZD7Q9H5P4 517 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TUBA4BQ9H853 241 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SLC52A3Q9NQ40 469 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 C1GALT1Q9NS00 363 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 USP22Q9UPT9 525 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 LYVE1Q9Y5Y7 322 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 FAM237AA0A1B0GTK4 181 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SH3D21A4FU49 640 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 HTRA2O43464 458 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 HCRTR2O43614 444 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 EIF1BO60739 113 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 PPP3CBP16298 524 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TPSB2P20231 275 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 S100A5P33763 92 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CRHR1P34998 444 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 GP5P40197 560 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms