RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 MT-ND2P03891 347 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 SOAT1P35610 550 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 MLLT10P55197 1068 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 ARHGAP19Q14CB8 494 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 PDGFRLQ15198 375 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 ZNF630Q2M218 657 aaPredicted RBP19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 WSCD2Q2TBF2 565 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 DEPDC1Q5TB30 811 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 FAM180BQ6P0A1 224 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 SLC5A8Q8N695 610 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 ANKRD53Q8N9V6 530 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 KCNC2Q96PR1 638 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 CUEDC1Q9NWM3 386 aaPredicted RBP19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 AHSPQ9NZD4 102 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 DGKBQ9Y6T7 804 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 ANKDD1BA6NHY2 528 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 RGS10O43665 173 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 FAM20BO75063 409 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 DRD3P35462 400 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 KHDRBS2Q5VWX1 349 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 GPR153Q6NV75 609 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 Q6ZPB1 254 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 ADGRF3Q8IZF5 1079 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 F2RL3Q96RI0 385 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 MENTQ9BUN1 341 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 PELI2Q9HAT8 420 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 THSD1Q9NS62 852 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 RTCAO00442 366 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 ARAFP10398 606 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 FCARP24071 287 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 PCBP3P57721 371 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 TAS2R38P59533 333 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 CYP4F2P78329 520 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 GPM6BQ13491 265 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 CYP27C1Q4G0S4 372 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 SYT6Q5T7P8 510 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 TANGO2Q6ICL3 276 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 OR52J3Q8NH60 311 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 CXorf36Q9H7Y0 433 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 RLIMQ9NVW2 624 aa19.88■□□□□ 0.77
CCDC88B-203ENST00000359902 MRPS14O60783 128 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 UQCRC2P22695 453 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 BSGP35613 385 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 OR10G2Q8NGC3 310 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 TM4SF18Q96CE8 201 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 AIF1LQ9BQI0 150 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 MS4A8Q9BY19 250 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 CCNB1IP1Q9NPC3 277 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 WASH6PQ9NQA3 447 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 RNF6Q9Y252 685 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 C2orf16Q68DN1 1984 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 PRAMEF33A0A0G2JMD5 474 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 GRXCR1A8MXD5 290 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 PRAMEF10O60809 474 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 SEMA3DO95025 777 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 GABARAPO95166 117 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 ZBTB11O95625 1053 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 VIPP01282 170 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 DDCP20711 480 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 PXNP49023 591 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 CDH12P55289 794 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 C21orf59P57076 290 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 SPIBQ01892 262 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 TMED1Q13445 227 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 FAM46CQ5VWP2 391 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 EGFLAMQ63HQ2 1017 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 GET4Q7L5D6 327 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 PRSS48Q7RTY5 328 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 CACUL1Q86Y37 369 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 ABHD11Q8NFV4 315 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 YIPF6Q96EC8 236 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 SIGLEC11Q96RL6 698 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 ACOT13Q9NPJ3 140 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 TBC1D23Q9NUY8 699 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 SNX8Q9Y5X2 465 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 DNMT3AQ9Y6K1 912 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 CDH23Q9H251 3354 aa19.87■□□□□ 0.77
CCDC88B-203ENST00000359902 RPN2P04844 631 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 ITGA2P17301 1181 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 PSMB5P28074 263 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 HSD17B2P37059 387 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 MAPK12P53778 367 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 CLCA4Q14CN2 919 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 MICAQ29983 383 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 EXOC3L2Q2M3D2 409 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 CCDC81Q6ZN84 652 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 SMYD1Q8NB12 490 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 IPCEF1Q8WWN9 437 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 NLNQ9BYT8 704 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 ABCG4Q9H172 646 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 SLAMF7Q9NQ25 335 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 A0A1W2PPV9 198 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 FEZF1A0PJY2 475 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 H7BY64 318 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 J3KTA2 159 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 PCDH8O95206 1070 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 FADS2O95864 444 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 IFNA14P01570 189 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 CA3P07451 260 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 ANXA8P13928 327 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms