RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 OR6K6Q8NGW6 343 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 BRSK1Q8TDC3 778 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 CLCA3PQ9Y6N3 262 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SLC43A1O75387 559 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 NSG1P42857 185 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 BTG1P62324 171 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 AZIN2Q96A70 460 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 PYCR2Q96C36 320 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 PCDHB11Q9Y5F2 797 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 CHD5Q8TDI0 1954 aa12.2□□□□□ -0.46
COL6A3-203ENST00000353578 SLC22A5O76082 557 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SLC26A5P58743 744 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 KCNAB2Q13303 367 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SP140Q13342 867 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 AARDQ4LEZ3 155 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TEX19Q8NA77 164 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 COQ8BQ96D53 544 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 ZDHHC5Q9C0B5 715 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 LHPPQ9H008 270 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 EVLQ9UI08 416 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 ADAMTS6Q9UKP5 1117 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 HEBP2Q9Y5Z4 205 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF638Q14966 1978 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SLITRK3O94933 977 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 IL7RP16871 459 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 PTPN2P17706 415 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 BDKRB2P30411 391 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 RPL7AP62424 266 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 RPP30P78346 268 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 STK11Q15831 433 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SMARCD3Q6STE5 483 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 C19orf35Q6ZS72 473 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TFAP2DQ7Z6R9 452 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 PHTF2Q8N3S3 785 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TTLL6Q8N841 843 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 PAPD5Q8NDF8 572 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SEMA3CQ99985 751 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 DOHHQ9BU89 302 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 EFCAB11Q9BUY7 163 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 hCG_1807616A0A1W2PRN6 198 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SLC15A5A6NIM6 579 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TP53P04637 393 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 NFYAP23511 347 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 ATP5A1P25705 553 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 BAATQ14032 418 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SUSD4Q5VX71 490 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 LCLAT1Q6UWP7 414 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 OR2AJ1Q8NGZ0 328 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 CSPG4P5Q96PW8 444 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 GPR22Q99680 433 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 NIT2Q9NQR4 276 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 PCDHB7Q9Y5E2 793 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 HLA-HP01893 362 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 CKMP06732 381 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 PBX3P40426 434 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TRAPPC5Q8IUR0 188 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 PLPP5Q8NEB5 264 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TGM7Q96PF1 710 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SYT3Q9BQG1 590 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 EVA1AQ9H8M9 152 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 LIN28AQ9H9Z2 209 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TPRP12270 2363 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SCGB1D2O95969 90 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 UGT8Q16880 541 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 C9orf64Q5T6V5 341 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 LIPKQ5VXJ0 399 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 ABLIM2Q6H8Q1 611 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 LINGO4Q6UY18 593 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 KCTD9Q7L273 389 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 C12orf57Q99622 126 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 POLE4Q9NR33 117 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 DNMT3LQ9UJW3 386 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 NFASCO94856 1347 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 A0A1W2PQL4 384 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 KCNC3Q14003 757 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 CYBRD1Q53TN4 286 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 RNF141Q8WVD5 230 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SLC5A7Q9GZV3 580 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 C17orf102A2RUQ5 167 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 OR8U9P0C7N5 309 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 UGT2B7P16662 529 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TIPARPQ7Z3E1 657 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 KCNRGQ8N5I3 272 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 OR8D1Q8WZ84 308 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 GSKIPQ9P0R6 139 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TNFSF13BQ9Y275 285 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 A8MV72 311 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SLC6A6P31641 620 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 RFX5P48382 616 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TAS2R40P59535 323 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SPCS2Q15005 226 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 TAF1AQ15573 450 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 MTFMTQ96DP5 389 aaKnown RBP12.19□□□□□ -0.46
COL6A3-203ENST00000353578 CRAMP1Q96RY5 1269 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF382Q96SR6 550 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 SLC35A5Q9BS91 424 aa12.19□□□□□ -0.46
COL6A3-203ENST00000353578 CKBP12277 381 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 MPIP34949 423 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 CRISP1P54107 249 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 PGBD3Q8N328 593 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms