RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TLR4O00206 839 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 IL1RNP18510 177 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 DEFB133Q30KQ1 61 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 PNCKQ6P2M8 343 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 FAM131AQ6UXB0 335 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 OR4N5Q8IXE1 308 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 GATSQ8NAP1 163 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.31□□□□□ -0.12
COL17A1-201ENST00000353479 ZNF483Q8TF39 744 aaPredicted RBP14.31□□□□□ -0.12
COL17A1-201ENST00000353479 ALPK1Q96QP1 1244 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 TXLNGYQ9BZA5 131 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 PRODH2Q9UF12 536 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 TSC22D4Q9Y3Q8 395 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 RPL36Q9Y3U8 105 aaKnown RBP14.31□□□□□ -0.12
COL17A1-201ENST00000353479 KLKB1P03952 638 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 ZNF3P17036 446 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 ANKRD54Q6NXT1 300 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 KCTD8Q6ZWB6 473 aa14.31□□□□□ -0.12
COL17A1-201ENST00000353479 RPF2Q9H7B2 306 aaKnown RBP14.31□□□□□ -0.12
COL17A1-201ENST00000353479 FAM155AB1AL88 458 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 RHDQ02161 417 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 DENND5AQ6IQ26 1287 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 IL22RA1Q8N6P7 574 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 PROKR2Q8NFJ6 384 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 KLHL6Q8WZ60 621 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 MYRFLQ96LU7 910 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 COMMD4Q9H0A8 199 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TREX1Q9NSU2 369 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TMEM184CQ9NVA4 438 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 IDH3BO43837 385 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 BCAS2O75934 225 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 CH25HO95992 272 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 HOXC13P31276 330 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 IL12RB1P42701 662 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 HTR6P50406 440 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 MXD1Q05195 221 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 PUM1Q14671 1186 aaKnown RBP eCLIP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 LAPTM4AQ15012 233 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TLR1Q15399 786 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TMEM35AQ53FP2 167 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 LHX8Q68G74 356 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 P4HA3Q7Z4N8 544 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 KLHDC8AQ8IYD2 350 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 VN1R2Q8NFZ6 395 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 ABCB9Q9NP78 766 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 CXXC1Q9P0U4 656 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 PRSS21Q9Y6M0 314 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 G3V2L1 256 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 PROS1P07225 676 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 IGFBP6P24592 240 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 BMP8BP34820 402 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 CTSCP53634 463 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 PRPF38BQ5VTL8 546 aaKnown RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 BMP8AQ7Z5Y6 402 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 GALNT10Q86SR1 603 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 LRRC25Q8N386 305 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 S100ZQ8WXG8 99 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TMEM125Q96AQ2 219 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TRIM43Q96BQ3 446 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 RHBDF1Q96CC6 855 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 MRPL38Q96DV4 380 aaKnown RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 UCK2Q9BZX2 261 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TRIM2Q9C040 744 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 PRKACGP22612 351 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 MNDAP41218 407 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 ZNF41P51814 821 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 RGS21Q2M5E4 152 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 P2RY8Q86VZ1 359 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TSPEARQ8WU66 669 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 RARRES3Q9UL19 164 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 ECM29Q5VYK3 1845 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 AIREO43918 545 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TRMUO75648 421 aaKnown RBP14.3□□□□□ -0.12
COL17A1-201ENST00000353479 MAGEA6P43360 314 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 CD47Q08722 323 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 TMEM44Q2T9K0 475 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 NANOGNBQ7Z5D8 188 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 HMGN2P46Q86SG4 172 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 ACVR1CQ8NER5 493 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 OR13J1Q8NGT2 312 aa14.3□□□□□ -0.12
COL17A1-201ENST00000353479 RCBTB2O95199 551 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 MADCAM1Q13477 382 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 LDAHQ9H6V9 325 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 DKKL1Q9UK85 242 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 ADAMTS7Q9UKP4 1686 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 EMC8O43402 210 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 FPR1P21462 350 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 AK4P27144 223 aaPredicted RBP14.29□□□□□ -0.12
COL17A1-201ENST00000353479 HSDL2Q6YN16 418 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 KRT74Q7RTS7 529 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 PEX11GQ96HA9 241 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 MCHR1Q99705 422 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 LOC110117498-PIK3R3F6TDL0 507 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 BLOC1S5-TXNDC5H3BN57 136 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 SOX14O95416 240 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 OR4D2P58180 307 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 SIM1P81133 766 aaPredicted RBP14.29□□□□□ -0.12
COL17A1-201ENST00000353479 PDZD3Q86UT5 571 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 OR8J3Q8NGG0 315 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms