RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MSLNQ13421 630 aaPredicted RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 PCBP2Q15366 365 aaKnown RBP eCLIP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 MED22Q15528 200 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 NRN1LQ496H8 165 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 DPPA4Q7L190 304 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 MTERF4Q7Z6M4 381 aaKnown RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 TRIM73Q86UV7 250 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 CCDC197Q8NCU1 140 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 FCRL4Q96PJ5 515 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 KCNC2Q96PR1 638 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 TRNT1Q96Q11 434 aaKnown RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 CPXM1Q96SM3 734 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 IL1RL2Q9HB29 575 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 MED31Q9Y3C7 131 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 COL6A6A6NMZ7 2263 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 C2orf72A6NCS6 295 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 APOC1P02654 83 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 HOXD4P09016 255 aaPredicted RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 PEPDP12955 493 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 ITIH1P19827 911 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 MAGP20916 626 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 SF3A3Q12874 501 aaKnown RBP eCLIP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 NAB1Q13506 487 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 NFYCQ13952 458 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 IL23RQ5VWK5 629 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 OR52E8Q6IFG1 317 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 ARMC8Q8IUR7 673 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 NELL1Q92832 810 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 MFSD3Q96ES6 412 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 WDR24Q96S15 920 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 P2RY12Q9H244 342 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 CKLFQ9UBR5 152 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 YARS2Q9Y2Z4 477 aaKnown RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 PROM1O43490 865 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 NME1P15531 152 aaKnown RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 SGSHP51688 502 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 ZBTB6Q15916 424 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 GARNL3Q5VVW2 1013 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 DNAJC14Q6Y2X3 702 aaPredicted RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 DHDDSQ86SQ9 333 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 PHF13Q86YI8 300 aaPredicted RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 CACTIN-AS1Q8N1I8 211 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF441Q8N8Z8 693 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 OR4A15Q8NGL6 344 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 SP7Q8TDD2 431 aaPredicted RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 TBC1D20Q96BZ9 403 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 DDIT4LQ96D03 193 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 SLC30A3Q99726 388 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 PIGQQ9BRB3 760 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 DHCR7Q9UBM7 475 aaKnown RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 AJAP1Q9UKB5 411 aaPredicted RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 AKAP12Q02952 1782 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SVILO95425 2214 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 A0A0J9YYE9 177 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 AIM2O14862 343 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 CREG1O75629 220 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 FGF4P08620 206 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 OGNP20774 298 aaKnown RBP8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SLC15A1P46059 708 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 FABP6P51161 128 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PHC1P78364 1004 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 CRTC2Q53ET0 693 aaPredicted RBP8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PERM1Q5SV97 790 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PDSS2Q86YH6 399 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 C11orf40Q8WZ69 217 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 HOXD1Q9GZZ0 328 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 LRTM1Q9HBL6 345 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 FSCN3Q9NQT6 498 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 NUDT4Q9NZJ9 180 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 A0A0D9SEW6 157 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 HAT1O14929 419 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 WISP1O95388 367 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 GP1BAP07359 652 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 IL1R2P27930 398 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 CTGFP29279 349 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PTGER4P35408 488 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SERPINF1P36955 418 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 RHAGQ02094 409 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SLC10A7Q0GE19 358 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PMS2P3Q13401 168 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 TOP3AQ13472 1001 aaPredicted RBP8.04□□□□□ -1.12
HMGB1-203ENST00000341423 MFSD13AQ14CX5 517 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 LRRC38Q5VT99 294 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 KBTBD7Q8WVZ9 684 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SGCZQ96LD1 299 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 TRIM2Q9C040 744 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 CENPMQ9NSP4 180 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SARDHQ9UL12 918 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 ABCG2Q9UNQ0 655 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 ARL2BPQ9Y2Y0 163 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 DOPEY2Q9Y3R5 2298 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 GABRDO14764 452 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 GSTM3P21266 225 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SHC2P98077 582 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SYPL2Q5VXT5 272 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 KIAA1958Q8N8K9 716 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 ADAMTS14Q8WXS8 1223 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 KISS1RQ969F8 398 aaPredicted RBP8.04□□□□□ -1.12
HMGB1-203ENST00000341423 ZSWIM1Q9BR11 485 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms