RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SERPINA1P01009 418 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 CCR7P32248 378 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 HSD11B2P80365 405 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 TMEM198Q66K66 360 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 C16orf87Q6PH81 154 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 MFSD9Q8NBP5 474 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 ZFPM2Q8WW38 1151 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 LRRC3Q9BY71 257 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 KIR3DX1Q9H7L2 352 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 FARSBQ9NSD9 589 aaKnown RBP9.73□□□□□ -0.85
USP54-201ENST00000339859 CUTCQ9NTM9 273 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 IL1RNP18510 177 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 ACADLP28330 430 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 FLYWCH1Q4VC44 716 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 KANK2Q63ZY3 851 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 GPR141Q7Z602 305 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 CCDC116Q8IYX3 515 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 DNAJC5GQ8N7S2 189 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 OR8K5Q8NH50 307 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 GRHL3Q8TE85 626 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 TANKQ92844 425 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 PPP1R14AQ96A00 147 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 OR6C1Q96RD1 312 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 TBC1D10AQ9BXI6 508 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 KCND3Q9UK17 655 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 MKL2Q9ULH7 1088 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 TLCD2A6NGC4 264 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 FAM227AF5H4B4 570 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 ALDOAP04075 364 aaKnown RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 ICAM2P13598 275 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 AHCYP23526 432 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 GABRA3P34903 492 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 HENMT1Q5T8I9 393 aaKnown RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 PTCHD4Q6ZW05 846 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 IQCHQ86VS3 1027 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 OR2L5Q8NG80 312 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 OR13J1Q8NGT2 312 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 WDR60Q8WVS4 1066 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 PYDC1Q8WXC3 89 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SEC14L1Q92503 715 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SLC25A36Q96CQ1 311 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 PDP1Q9P0J1 537 aaPredicted RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 NFS1Q9Y697 457 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 FLRT2O43155 660 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SMNDC1O75940 238 aaKnown RBP eCLIP9.72□□□□□ -0.85
USP54-201ENST00000339859 OLFM2O95897 454 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 GPIP06744 558 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 ABHD18Q0P651 414 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 CCDC74AQ96AQ1 378 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 COL21A1Q96P44 957 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 OSBPL10Q9BXB5 764 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SEMA6CQ9H3T2 930 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 PDFQ9HBH1 243 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 TMEM233B4DJY2 109 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 CPNE3O75131 537 aaKnown RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 NME6O75414 186 aaPredicted RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 RAB15P59190 212 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 BTBD16Q32M84 506 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 AAGABQ6PD74 315 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 HDDC2Q7Z4H3 204 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 PIANPQ8IYJ0 282 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SMYD1Q8NB12 490 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 GEMIN6Q8WXD5 167 aaKnown RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 TWSG1Q9GZX9 223 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 HOXD1Q9GZZ0 328 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 ZNF236Q9UL36 1845 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 MAGEA13PA6NCF6 341 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 GABRG2P18507 467 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 PGFP49763 221 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 MTPNP58546 118 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SPATS1Q496A3 300 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 LIN52Q52LA3 116 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 PIP5KL1Q5T9C9 394 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 LAIR1Q6GTX8 287 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 Q6ZS52 159 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SH3GL3Q99963 347 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 MBNL1Q9NR56 388 aaKnown RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 GADD45GO95257 159 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 UBTFL6P0CB48 400 aaPredicted RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 BLVRAP53004 296 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 CASP9P55211 416 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 UFM1P61960 85 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 CD300LGQ6UXG3 332 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 PACS2Q86VP3 889 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SVOPLQ8N434 492 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 ESX1Q8N693 406 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 WDR36Q8NI36 951 aaKnown RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 NFKBIDQ8NI38 313 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 BIRC7Q96CA5 298 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 ELF4Q99607 663 aaPredicted RBP9.72□□□□□ -0.85
USP54-201ENST00000339859 C1GALT1Q9NS00 363 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 SMOXQ9NWM0 555 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 CDH22Q9UJ99 828 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 PCTPQ9UKL6 214 aa9.72□□□□□ -0.85
USP54-201ENST00000339859 NPIPA5E9PKD4 350 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 ATP6V1G2O95670 118 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 PGRP06401 933 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 AHRP35869 848 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 RBPJQ06330 500 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 C5orf22Q49AR2 442 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms