RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 CLK3P49761 638 aaKnown RBP16.61■□□□□ 0.25
DDX28-201ENST00000332395 SEC13P55735 322 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 REEP5Q00765 189 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 IL5RAQ01344 420 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 DMPKQ09013 629 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 KEAP1Q14145 624 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 ATG16L2Q8NAA4 619 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 LINC01555Q8NAE3 123 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 SETD9Q8NE22 299 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 CNDP2Q96KP4 475 aaKnown RBP16.61■□□□□ 0.25
DDX28-201ENST00000332395 C12orf66Q96MD2 445 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 COG8Q96MW5 612 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 PRAP1Q96NZ9 151 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 RPP25Q9BUL9 199 aaKnown RBP16.61■□□□□ 0.25
DDX28-201ENST00000332395 TMEM121BQ9BXQ6 578 aaPredicted RBP16.61■□□□□ 0.25
DDX28-201ENST00000332395 NKX2-4Q9H2Z4 354 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 MAP4K5Q9Y4K4 846 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 XIRP2A4UGR9 3374 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 PRR23AA6NEV1 266 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 LATO43561 262 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 CBFA2T3O75081 653 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 MAPK12P53778 367 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 CDK5R2Q13319 367 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 PPP2R2DQ66LE6 453 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 ZNF776Q68DI1 518 aaPredicted RBP16.61■□□□□ 0.25
DDX28-201ENST00000332395 ANKRD54Q6NXT1 300 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 FAM180BQ6P0A1 224 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 ADGRF3Q8IZF5 1079 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 NFKBIDQ8NI38 313 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 CNIH3Q8TBE1 160 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 SPPL2AQ8TCT8 520 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 FERD3LQ96RJ6 166 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 INSM2Q96T92 566 aaPredicted RBP16.61■□□□□ 0.25
DDX28-201ENST00000332395 EPYCQ99645 322 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 RUBCNLQ9H714 662 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 KRT84Q9NSB2 600 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 ICKQ9UPZ9 632 aa16.61■□□□□ 0.25
DDX28-201ENST00000332395 BOLA2-SMG1P6H3BVE0 249 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 SEC14L2O76054 403 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 ATE1O95260 518 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 KRT75O95678 551 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 DDCP20711 480 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 BSGP35613 385 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 RAB15P59190 212 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 EEF1A2Q05639 463 aaKnown RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 GRSF1Q12849 480 aaKnown RBP eCLIP16.6■□□□□ 0.25
DDX28-201ENST00000332395 MLF2Q15773 248 aaPredicted RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 FAHD1Q6P587 224 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 TSEN54Q7Z6J9 526 aaKnown RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 TTC29Q8NA56 475 aaPredicted RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 TAMM41Q96BW9 452 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 MYOCQ99972 504 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 TRMT61BQ9BVS5 477 aaKnown RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 NAA50Q9GZZ1 169 aaKnown RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 RAD21L1Q9H4I0 556 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 CAPN5O15484 640 aaPredicted RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 CCDC159P0C7I6 412 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 PORP16435 677 aaPredicted RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 MATN1P21941 496 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 SERPINB1P30740 379 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 RRM2P31350 389 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 KIR2DL1P43626 348 aaPredicted RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 RXRGP48443 463 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 RPS21P63220 83 aaKnown RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 CDK6Q00534 326 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 PIGFQ07326 219 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 SGCGQ13326 291 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 KIAA1211LQ6NV74 962 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 TMEM184AQ6ZMB5 413 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 PAGE2Q7Z2X7 111 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 RAB42Q8N4Z0 105 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 BPIFB6Q8NFQ5 453 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 GANCQ8TET4 914 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 GIPC3Q8TF64 312 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 ZNF566Q969W8 418 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 TM4SF18Q96CE8 201 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 DCUN1D5Q9BTE7 237 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 PITHD1Q9GZP4 211 aaPredicted RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 MKRN2Q9H000 416 aaKnown RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 LHPPQ9H008 270 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 PAK1IP1Q9NWT1 392 aaPredicted RBP16.6■□□□□ 0.25
DDX28-201ENST00000332395 FBXL12Q9NXK8 326 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 NDUFAF4Q9P032 175 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 KCNK6Q9Y257 313 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 PCDHGB3Q9Y5G1 929 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 GMPPBQ9Y5P6 360 aa16.6■□□□□ 0.25
DDX28-201ENST00000332395 PLXND1Q9Y4D7 1925 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 K7EQS6 105 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 RFXAPO00287 272 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 ANGPTL1O95841 491 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 LAMP2P13473 410 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 TNFRSF1BP20333 461 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 TUBA3CQ13748 450 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 ELOAQ14241 798 aaKnown RBP16.59■□□□□ 0.25
DDX28-201ENST00000332395 ZNF630Q2M218 657 aaPredicted RBP16.59■□□□□ 0.25
DDX28-201ENST00000332395 CCDC80Q76M96 950 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 TIMM29Q9BSF4 260 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 C1QTNF2Q9BXJ5 285 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 CXorf36Q9H7Y0 433 aa16.59■□□□□ 0.25
DDX28-201ENST00000332395 NT5DC2Q9H857 520 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms