RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TFP02787 698 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF763Q0D2J5 394 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ARHGAP11AQ6P4F7 1023 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 DNAJC22Q8N4W6 341 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 KLHL13Q9P2N7 655 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 PON2Q15165 354 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 MYRFLQ96LU7 910 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 PHRF1Q9P1Y6 1649 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 HHLA1C9JL84 531 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 E2F3O00716 465 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 CD3GP09693 182 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 ART1P52961 327 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 CDK3Q00526 305 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 SNTB2Q13425 540 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 PKP4Q99569 1192 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 DOHHQ9BU89 302 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 G6PC3Q9BUM1 346 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 SIRPGQ9P1W8 387 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 HMX3A6NHT5 357 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 E7EQ34 232 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 P2RX6O15547 441 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 IFNLR1Q8IU57 520 aaPredicted RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 KIAA0319LQ8IZA0 1049 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF486Q96H40 463 aaPredicted RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 MKRN2Q9H000 416 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 APMAPQ9HDC9 416 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 TMEM59LQ9UK28 342 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 TEX264Q9Y6I9 313 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 IRS2Q9Y4H2 1338 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 ANKRD54Q6NXT1 300 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 VWA5B2Q8N398 1253 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 C22orf15Q8WYQ4 148 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 ACTL8Q9H568 366 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 XRN1Q8IZH2 1706 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 A0A096LPI6 279 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 UBBP0CG47 229 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 UBCP0CG48 685 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 RPS27AP62979 156 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 UBA52P62987 128 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 GFOD2Q3B7J2 385 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 S100A7AQ86SG5 101 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 EBF4Q9BQW3 602 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 ATG10Q9H0Y0 220 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 KLHL9Q9P2J3 617 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 DHDHQ9UQ10 334 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 PRKAB1Q9Y478 270 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 ATG2BQ96BY7 2078 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 C10orf71Q711Q0 1435 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 LATO43561 262 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 TAS2R20P59543 309 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 PDSS1Q5T2R2 415 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 KREMEN1Q96MU8 473 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 TRIB3Q96RU7 358 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 BARD1Q99728 777 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 CMKLR1Q99788 373 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 MEAF6Q9HAF1 191 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 LUZP4Q9P127 313 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 MROH1Q8NDA8 1641 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 BUD23O43709 281 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 PTPRRQ15256 657 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 CAMKVQ8NCB2 501 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 SLC16A10Q8TF71 515 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 SMAP2Q8WU79 429 aaPredicted RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 CORO1BQ9BR76 489 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 TMEM100Q9NV29 134 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 UBIAD1Q9Y5Z9 338 aa13.8□□□□□ -0.2
COL7A1-201ENST00000328333 MYO5AQ9Y4I1 1855 aaKnown RBP13.8□□□□□ -0.2
COL7A1-201ENST00000328333 J3QLW9 94 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 IRF6O14896 467 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 CHRM1P11229 460 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF19P17023 458 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 MEF2DQ14814 521 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 C1orf167Q5SNV9 1468 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 AMY2BP19961 511 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 CHAF1BQ13112 559 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 PAPD4Q6PIY7 484 aaKnown RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 ATG4BQ9Y4P1 393 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 SLIT2O94813 1529 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 MANSC4A6NHS7 340 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 RTL6Q6ICC9 239 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 SLC35F5Q8WV83 523 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 SRMSQ9H3Y6 488 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 AMBNQ9NP70 447 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 ELOVL2Q9NXB9 296 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 DCCP43146 1447 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 HEATR5BQ9P2D3 2071 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 POLR2HP52434 150 aaKnown RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 RPS3AP61247 264 aaKnown RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 PEA15Q15121 130 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 FCRL5Q96RD9 977 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 ACP6Q9NPH0 428 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 NOCTQ9UK39 431 aaKnown RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 SMIM10L2AP0DMW4 78 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 SMIM10L2BP0DMW5 78 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 MAGEA11P43364 429 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 CHDHQ8NE62 594 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 BBS10Q8TAM1 723 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 SYT3Q9BQG1 590 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 GRXCR2A6NFK2 248 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 MEIS2O14770 477 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms