RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 C9orf43Q8TAL5 461 aaPredicted RBP12.59□□□□□ -0.39
VPS28-201ENST00000292510 RDH11Q8TC12 318 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 TCP10LQ8TDR4 215 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 NACC2Q96BF6 587 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 CCDC126Q96EE4 140 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 KCNC2Q96PR1 638 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 FRG2BQ96QU4 278 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 KCNA7Q96RP8 456 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 SERINC2Q96SA4 455 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 ZNF382Q96SR6 550 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 HBEGFQ99075 208 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 TBCDQ9BTW9 1192 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 ADNPQ9H2P0 1102 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 COPS7BQ9H9Q2 264 aaPredicted RBP12.59□□□□□ -0.39
VPS28-201ENST00000292510 CLK4Q9HAZ1 481 aaKnown RBP12.59□□□□□ -0.39
VPS28-201ENST00000292510 ZNF160Q9HCG1 818 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 OXSMQ9NWU1 459 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 TP53TG5Q9Y2B4 290 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 SPENQ96T58 3664 aaKnown RBP12.59□□□□□ -0.39
VPS28-201ENST00000292510 A0A088AWK7 358 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 IGHV1-45A0A0A0MS14 117 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 MKRN2OSH3BPM6 223 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 PSMD12O00232 456 aaPredicted RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 FOXE1O00358 373 aaPredicted RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 PLPP1O14494 284 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 UBFD1O14562 309 aaKnown RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 TYROBPO43914 113 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 C1QL1O75973 258 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 PDYNP01213 254 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 CELA2AP08217 269 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 MAOAP21397 527 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 ZNF10P21506 573 aaPredicted RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 ATP5A1P25705 553 aaKnown RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 PTX3P26022 381 aaPredicted RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 SSR2P43308 183 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 HNRNPFP52597 415 aaKnown RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 LIM2P55344 173 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 RAB38P57729 211 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 DNAJB13P59910 316 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 Q0VFX4 171 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 LCP2Q13094 533 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 IFT88Q13099 833 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 ABRAXAS2Q15018 415 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 PCOLCEQ15113 449 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 AP5B1Q2VPB7 878 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 LRIG3Q6UXM1 1119 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 GPRIN3Q6ZVF9 776 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 ANKRD37Q7Z713 158 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 EXOC3L1Q86VI1 746 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 GALNT16Q8N428 558 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 ACOT4Q8N9L9 421 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 SRFBP1Q8NEF9 429 aaKnown RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 METTL21AQ8WXB1 218 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 RGMAQ96B86 450 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 CSF3RQ99062 836 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 MAPKAP1Q9BPZ7 522 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 SLC25A23Q9BV35 468 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 MECRQ9BV79 373 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 NUDT9Q9BW91 350 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 NPLQ9BXD5 320 aaPredicted RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 ZNF717Q9BY31 904 aaPredicted RBP12.58□□□□□ -0.4
VPS28-201ENST00000292510 ELOVL6Q9H5J4 265 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 ATP13A2Q9NQ11 1180 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 TRPS1Q9UHF7 1281 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 TUBD1Q9UJT1 453 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 DAPP1Q9UN19 280 aa12.58□□□□□ -0.4
VPS28-201ENST00000292510 SCN2AQ99250 2005 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 LOC102723996A0A087X1L8 192 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 EIF4E1BA6NMX2 242 aaKnown RBP12.57□□□□□ -0.4
VPS28-201ENST00000292510 MANBAO00462 879 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 PRMT3O60678 531 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 EEDO75530 441 aaKnown RBP12.57□□□□□ -0.4
VPS28-201ENST00000292510 CEACAM4O75871 244 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 SEC24DO94855 1032 aaPredicted RBP12.57□□□□□ -0.4
VPS28-201ENST00000292510 SCELO95171 688 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 MLYCDO95822 493 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 HPP00738 406 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 IL10P22301 178 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 HIST1H1TP22492 207 aaPredicted RBP12.57□□□□□ -0.4
VPS28-201ENST00000292510 JAK1P23458 1154 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 ITGA3P26006 1051 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 ALDH3A1P30838 453 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 HTR6P50406 440 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 FOXA1P55317 472 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 NFATC3Q12968 1075 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 NSDHLQ15738 373 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 CFAP157Q5JU67 520 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 COLEC12Q5KU26 742 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 LIPMQ5VYY2 423 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 OR4C11Q6IEV9 310 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 FRMD7Q6ZUT3 714 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 NDUFAF7Q7L592 441 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 CPEB2Q7Z5Q1 589 aaKnown RBP12.57□□□□□ -0.4
VPS28-201ENST00000292510 PLPP5Q8NEB5 264 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 METTL6Q8TCB7 284 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 AGAP11Q8TF27 550 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 SELENOMQ8WWX9 145 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 PTCHD1Q96NR3 888 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 GATA5Q9BWX5 397 aaPredicted RBP12.57□□□□□ -0.4
VPS28-201ENST00000292510 SHCBP1LQ9BZQ2 653 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms