RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 EEF1A2Q05639 463 aaKnown RBP19.17■□□□□ 0.66
VPS53-201ENST00000291074 TMED1Q13445 227 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 LRRTM4Q86VH4 590 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 C17orf64Q86WR6 236 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 C7orf61Q8IZ16 206 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 ZNF540Q8NDQ6 660 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 UBE2E3Q969T4 207 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 ZNF717Q9BY31 904 aaPredicted RBP19.17■□□□□ 0.66
VPS53-201ENST00000291074 HDAC8Q9BY41 377 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 CXorf36Q9H7Y0 433 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 SLAMF7Q9NQ25 335 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 MBNL1Q9NR56 388 aaKnown RBP19.17■□□□□ 0.66
VPS53-201ENST00000291074 SERGEFQ9UGK8 458 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 TPRKBQ9Y3C4 175 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 HSPE1-MOB4S4R3N1 261 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 MID1O15344 667 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 PCDH8O95206 1070 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 VIPP01282 170 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 TFPTP0C1Z6 253 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 SPIBQ01892 262 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 CYP2A13Q16696 494 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 IFI44LQ53G44 452 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 DSG4Q86SJ6 1040 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 TSPYL5Q86VY4 417 aaPredicted RBP19.17■□□□□ 0.66
VPS53-201ENST00000291074 KRT78Q8N1N4 520 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 SLC5A8Q8N695 610 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 APH1BQ8WW43 257 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 SZT2Q5T011 3432 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 LATO43561 262 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 RPL3P39023 403 aaKnown RBP19.16■□□□□ 0.66
VPS53-201ENST00000291074 ALDH9A1P49189 494 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 CTF1Q16619 201 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 TRIM40Q6P9F5 258 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 VITQ6UXI7 678 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.16■□□□□ 0.66
VPS53-201ENST00000291074 ENTHD1Q8IYW4 607 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 OXR1Q8N573 874 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 GIPC3Q8TF64 312 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 KLK6Q92876 244 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 CHFRQ96EP1 664 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 FAM210AQ96ND0 272 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 PITX2Q99697 317 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 SCN3BQ9NY72 215 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 PCDHGA6Q9Y5G7 932 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 MYO9BQ13459 2157 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 PRAMEF33A0A0G2JMD5 474 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 PRAMEF10O60809 474 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 GJA4P35212 333 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 DGCR6Q14129 220 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 OR5K2Q8NHB8 316 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 RORBQ92753 470 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 RAD21L1Q9H4I0 556 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 GALNT8Q9NY28 637 aa19.16■□□□□ 0.66
VPS53-201ENST00000291074 THAP10Q9P2Z0 257 aaPredicted RBP19.16■□□□□ 0.66
VPS53-201ENST00000291074 ANKDD1BA6NHY2 528 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 H7BY64 318 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 DPM1O60762 260 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 ALDH4A1P30038 563 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 CLCNKAP51800 687 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 BMXP51813 675 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 FADDQ13158 208 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 PDGFRLQ15198 375 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 AHSA2Q719I0 299 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 PLD3Q8IV08 490 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 OR10G2Q8NGC3 310 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 PRAP1Q96NZ9 151 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 ZNF300Q96RE9 604 aaPredicted RBP19.15■□□□□ 0.66
VPS53-201ENST00000291074 MENTQ9BUN1 341 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 TMEM106CQ9BVX2 250 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 TMEM38AQ9H6F2 299 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 SH3GLB1Q9Y371 365 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 PCDHGB1Q9Y5G3 927 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 DOCK8Q8NF50 2099 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 J3QRK9 145 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 LSM3P62310 102 aaKnown RBP19.15■□□□□ 0.66
VPS53-201ENST00000291074 RPA4Q13156 261 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 EXOC3L2Q2M3D2 409 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 AGBL4Q5VU57 503 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 KHDRBS2Q5VWX1 349 aaKnown RBP19.15■□□□□ 0.66
VPS53-201ENST00000291074 METRNLQ641Q3 311 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 FNDC8Q8TC99 324 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 MTERF3Q96E29 417 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 GABARAPL3Q9BY60 117 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 RAB23Q9ULC3 237 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 WDR37Q9Y2I8 494 aa19.15■□□□□ 0.66
VPS53-201ENST00000291074 ADAMDEC1O15204 470 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 KAT7O95251 611 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 ERGP11308 486 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 MAPK12P53778 367 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 CXCR4P61073 352 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 RBBP4Q09028 425 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 ANKRD13BQ86YJ7 626 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 OR9Q2Q8NGE9 314 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 OR4C15Q8NGM1 316 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 DNASE1L2Q92874 299 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 NIPSNAP1Q9BPW8 284 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 MS4A8Q9BY19 250 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 PNMA8BQ9ULN7 279 aaPredicted RBP19.14■□□□□ 0.65
VPS53-201ENST00000291074 RNF6Q9Y252 685 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 MYO10Q9HD67 2058 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms