RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 ITGA10O75578 1167 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 PLCXD2Q0VAA5 305 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 ELOAQ14241 798 aaKnown RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 HSDL2Q6YN16 418 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 OR5L2Q8NGL0 311 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 THAP3Q8WTV1 239 aaPredicted RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 ZDHHC1Q8WTX9 485 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 KLF16Q9BXK1 252 aaPredicted RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 HYKKA2RU49 373 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 FARS2O95363 451 aaKnown RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 IL33O95760 270 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 CH25HO95992 272 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 PAX7P23759 505 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 ZFAND4Q86XD8 727 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 BORCS5Q969J3 196 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 BHLHE41Q9C0J9 482 aaPredicted RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 IL17CQ9P0M4 197 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 SCN11AQ9UI33 1791 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 GATBO75879 557 aaKnown RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 SYNGR4O95473 234 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 PDYNP01213 254 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 FGF3P11487 239 aaPredicted RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 SLC6A6P31641 620 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 TMEM225Q6GV28 225 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 PAMR1Q6UXH9 720 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 AQP11Q8NBQ7 271 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 TRMT2BQ96GJ1 504 aaKnown RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 MCOLN1Q9GZU1 580 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 IFT46Q9NQC8 304 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 EMC8O43402 210 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 DIRAS1O95057 198 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 RPLP0P05388 317 aaKnown RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 BCKDHAP12694 445 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 OR12D2P58182 307 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 HAVCR1Q96D42 359 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 TCEAL4Q96EI5 215 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 RPF2Q9H7B2 306 aaKnown RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 HHATLQ9HCP6 504 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 NLGN3Q9NZ94 848 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 MARK1Q9P0L2 795 aa17.82■□□□□ 0.44
PCDH1-201ENST00000287008 WBP11Q9Y2W2 641 aaKnown RBP17.82■□□□□ 0.44
PCDH1-201ENST00000287008 CLUP10909 449 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 AZGP1P25311 298 aaKnown RBP17.81■□□□□ 0.44
PCDH1-201ENST00000287008 ITGB7P26010 798 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 ATP4BP51164 291 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 SELENOVP59797 346 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 SLC7A9P82251 487 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 CHAF1BQ13112 559 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 FADDQ13158 208 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 ARFRP1Q13795 201 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 PACRGLQ8N7B6 248 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 NUP43Q8NFH3 380 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 BBS10Q8TAM1 723 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 ZIC5Q96T25 663 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 PEX16Q9Y5Y5 336 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 RHDQ02161 417 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 CBX3Q13185 183 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 CBARPQ8N350 705 aaPredicted RBP17.81■□□□□ 0.44
PCDH1-201ENST00000287008 LRRC25Q8N386 305 aaPredicted RBP17.81■□□□□ 0.44
PCDH1-201ENST00000287008 TNFAIP8L1Q8WVP5 186 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 MAU2Q9Y6X3 613 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 SMAD6O43541 496 aaKnown RBP17.81■□□□□ 0.44
PCDH1-201ENST00000287008 LATO43561 262 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 SCO2O43819 266 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 DFNA5O60443 496 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 MAGP20916 626 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 FDXRP22570 491 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 FMO3P31513 532 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 TNFRSF4P43489 277 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 OR3A3P47888 321 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 OR3A2P47893 321 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 HSF2Q03933 536 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 LIN52Q52LA3 116 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 OR10Q1Q8NGQ4 319 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 IL26Q9NPH9 171 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 ING3Q9NXR8 418 aa17.81■□□□□ 0.44
PCDH1-201ENST00000287008 PDLIM1O00151 329 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 DRD2P14416 443 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 IL1RNP18510 177 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 ACADVLP49748 655 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 NNATQ16517 81 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 UNC50Q53HI1 259 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 HHIPQ96QV1 700 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 TMEM184CQ9NVA4 438 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 HCN4Q9Y3Q4 1203 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 A0A1W2PRG6 482 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 RPP14O95059 124 aaKnown RBP17.8■□□□□ 0.44
PCDH1-201ENST00000287008 CDH11P55287 796 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 DMPKQ09013 629 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 ZNF252P-AS1Q0IIN9 211 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 MADCAM1Q13477 382 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 TPRG1LQ5T0D9 272 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 GATSQ8NAP1 163 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 BIRC7Q96CA5 298 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 ANKRA2Q9H9E1 313 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 GRHPRQ9UBQ7 328 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 EFCAB9A8MZ26 197 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 RTCAO00442 366 aaKnown RBP17.8■□□□□ 0.44
PCDH1-201ENST00000287008 TYROBPO43914 113 aa17.8■□□□□ 0.44
PCDH1-201ENST00000287008 NUDT1P36639 197 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms