RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 TMEM215Q68D42 235 aa8.74□□□□□ -1.01
MSH4-201ENST00000263187 DDX53Q86TM3 631 aaKnown RBP8.74□□□□□ -1.01
MSH4-201ENST00000263187 DNAJB8Q8NHS0 232 aa8.74□□□□□ -1.01
MSH4-201ENST00000263187 ZNF480Q8WV37 535 aa8.74□□□□□ -1.01
MSH4-201ENST00000263187 MGLLQ99685 303 aa8.74□□□□□ -1.01
MSH4-201ENST00000263187 PRR14Q9BWN1 585 aa8.74□□□□□ -1.01
MSH4-201ENST00000263187 SLC25A13Q9UJS0 675 aa8.74□□□□□ -1.01
MSH4-201ENST00000263187 BACE2Q9Y5Z0 518 aa8.74□□□□□ -1.01
MSH4-201ENST00000263187 CLDN24A6NM45 220 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 TGM5O43548 720 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 COQ9O75208 318 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 DNAJB5O75953 348 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 BCHEP06276 602 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 IL1RNP18510 177 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 TIA1P31483 386 aaKnown RBP eCLIP8.73□□□□□ -1.01
MSH4-201ENST00000263187 MVDP53602 400 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 DEFB103AP81534 67 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 TMEM115Q12893 351 aaPredicted RBP8.73□□□□□ -1.01
MSH4-201ENST00000263187 SPANXN2Q5MJ10 180 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 LIPJQ5W064 366 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 BRAT1Q6PJG6 821 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 USP43Q70EL4 1123 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 FAM9CQ8IZT9 166 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 AP2M1Q96CW1 435 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 EPYCQ99645 322 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 MACROD1Q9BQ69 325 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 TMEM175Q9BSA9 504 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 YIPF4Q9BSR8 244 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 HMX1Q9NP08 348 aaPredicted RBP8.73□□□□□ -1.01
MSH4-201ENST00000263187 MIEF1Q9NQG6 463 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 SRRDQ9UH36 339 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 STOML2Q9UJZ1 356 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 WDR37Q9Y2I8 494 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 PCDHGB6Q9Y5F9 930 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 WNT6Q9Y6F9 365 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 KCNE2Q9Y6J6 123 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 NUMA1Q14980 2115 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 ARHGAP33O14559 1287 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 ADAMDEC1O15204 470 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 OR10H3O60404 316 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 CCNKO75909 580 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 NTN1O95631 604 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 LRG1P02750 347 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 CATP04040 527 aaKnown RBP8.73□□□□□ -1.01
MSH4-201ENST00000263187 CTSLP07711 333 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 CHMP24386 653 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 MAPK8P45983 427 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 AP1S2P56377 157 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 CSTF3Q12996 717 aaKnown RBP8.73□□□□□ -1.01
MSH4-201ENST00000263187 VEZF1Q14119 521 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 LRIT3Q3SXY7 679 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 TRIM60Q495X7 471 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 BCL7AQ4VC05 210 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 MED27Q6P2C8 311 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 FAM20CQ8IXL6 584 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 ING5Q8WYH8 240 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 PRRG3Q9BZD7 231 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 CEP44Q9C0F1 390 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 MMP27Q9H306 513 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 TP63Q9H3D4 680 aaPredicted RBP8.73□□□□□ -1.01
MSH4-201ENST00000263187 NMNAT1Q9HAN9 279 aaPredicted RBP8.73□□□□□ -1.01
MSH4-201ENST00000263187 ACER3Q9NUN7 267 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 SPG21Q9NZD8 308 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 HSPE1-MOB4S4R3N1 261 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 MYO10Q9HD67 2058 aa8.73□□□□□ -1.01
MSH4-201ENST00000263187 FEZF1A0PJY2 475 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 GLOD5A6NK44 160 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 KMOO15229 486 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 GPX5O75715 221 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 TYRP14679 529 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 PRKAG1P54619 331 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 NTHL1P78549 312 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 ZNF284Q2VY69 593 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 LY6G5CQ5SRR4 150 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 PLEKHS1Q5SXH7 462 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 TMIGD1Q6UXZ0 262 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 CEACAM20Q6UY09 585 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 SHFQ7M4L6 423 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 STARD8Q92502 1023 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 TRMT61AQ96FX7 289 aaKnown RBP8.72□□□□□ -1.01
MSH4-201ENST00000263187 PITX2Q99697 317 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 SLC6A16Q9GZN6 736 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 CHST8Q9H2A9 424 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 ERVW-1Q9UQF0 538 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 SPTBN5Q9NRC6 3674 aaKnown RBP8.72□□□□□ -1.01
MSH4-201ENST00000263187 PRUNE2Q8WUY3 3088 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 IGLV3-16A0A075B6K0 115 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 A0A1W2PRB8 838 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 HOXA2O43364 376 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 CCNB2O95067 398 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 MED26O95402 600 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 CSF2P04141 144 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 ELFN1P0C7U0 828 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 LIM2P55344 173 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 CAV3P56539 151 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 MESP2Q0VG99 397 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 IRF3Q14653 427 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 SEC23BQ15437 767 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 LIPKQ5VXJ0 399 aa8.72□□□□□ -1.01
MSH4-201ENST00000263187 NRARPQ7Z6K4 114 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms