RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 VPS9D1Q9Y2B5 631 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 B8ZZF3 427 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 LZTS3O60299 673 aaPredicted RBP13.77□□□□□ -0.21
SDC1-201ENST00000254351 GADD45GO95257 159 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 CLDN7O95471 211 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 EPOP01588 193 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 SOAT1P35610 550 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 CCT3P49368 545 aaKnown RBP13.77□□□□□ -0.21
SDC1-201ENST00000254351 CRYBB1P53674 252 aaPredicted RBP13.77□□□□□ -0.21
SDC1-201ENST00000254351 C19orf57Q0VDD7 668 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 CCDC149Q6ZUS6 474 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 ZBTB2Q8N680 514 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 OR4A15Q8NGL6 344 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 OR52P1PQ8NH57 321 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 QRFPRQ96P65 431 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 EPYCQ99645 322 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 TRIM62Q9BVG3 475 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 GKN1Q9NS71 199 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 MBD1Q9UIS9 605 aaPredicted RBP13.77□□□□□ -0.21
SDC1-201ENST00000254351 SNTNA6NMZ2 147 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 PRAMEF4O60810 478 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 PDGFAP04085 211 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 ZNF7P17097 686 aaPredicted RBP13.77□□□□□ -0.21
SDC1-201ENST00000254351 GABRB1P18505 474 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 SOX9P48436 509 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 CHIT1Q13231 466 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 PRAMEF9Q5VWM5 478 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 PLEKHM3Q6ZWE6 761 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 REPS1Q96D71 796 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 MED8Q96G25 268 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 DUSP26Q9BV47 211 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 DPCDQ9BVM2 203 aaPredicted RBP13.77□□□□□ -0.21
SDC1-201ENST00000254351 TBC1D17Q9HA65 648 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 C3orf14Q9HBI5 128 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 B3GAT2Q9NPZ5 323 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 TXNL4BQ9NX01 149 aaKnown RBP13.77□□□□□ -0.21
SDC1-201ENST00000254351 POFUT2Q9Y2G5 429 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 OARD1Q9Y530 152 aa13.77□□□□□ -0.21
SDC1-201ENST00000254351 MKI67P46013 3256 aaKnown RBP13.76□□□□□ -0.21
SDC1-201ENST00000254351 PIKFYVEQ9Y2I7 2098 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 PRAMEF33A0A0G2JMD5 474 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 C2orf78A6NCI8 922 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 TLX2O43763 284 aaPredicted RBP13.76□□□□□ -0.21
SDC1-201ENST00000254351 PRAMEF10O60809 474 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 ANXA5P08758 320 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 DDCP20711 480 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 PTNP21246 168 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 DGKAP23743 735 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 PKLRP30613 574 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 CD52P31358 61 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 WNT3P56703 355 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 RGNQ15493 299 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 DDI2Q5TDH0 399 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 ANKRD54Q6NXT1 300 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 CNIH2Q6PI25 160 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 TLK2Q86UE8 772 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 HOMEZQ8IX15 550 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 RDH10Q8IZV5 341 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 ANGPTL6Q8NI99 470 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 CREB3L4Q8TEY5 395 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 RIT1Q92963 219 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 PTPN18Q99952 460 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 MAN2B2Q9Y2E5 1009 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 GABRR3A8MPY1 467 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 WASH4PA8MWX3 477 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 CASKO14936 926 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 OR10H3O60404 316 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 RPS5P46782 204 aaKnown RBP13.76□□□□□ -0.21
SDC1-201ENST00000254351 PSEN2P49810 448 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 BCL2L15Q5TBC7 163 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 UBE2R2Q712K3 238 aaPredicted RBP13.76□□□□□ -0.21
SDC1-201ENST00000254351 BEST4Q8NFU0 473 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 NELL2Q99435 816 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 PLCXD1Q9NUJ7 323 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 MGAT4AQ9UM21 535 aa13.76□□□□□ -0.21
SDC1-201ENST00000254351 A0A075B6Q4 140 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 TMEM229AB2RXF0 380 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 SH3BP5O60239 455 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 SEMG1P04279 462 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 FCER2P06734 321 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 MSL3P1P0C860 447 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 AMD1P17707 334 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 GPX2P18283 190 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 RPS25P62851 125 aaKnown RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 SELENOWP63302 87 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 LSM11P83369 360 aaKnown RBP eCLIP13.75□□□□□ -0.21
SDC1-201ENST00000254351 MC1RQ01726 317 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 RPL6Q02878 288 aaKnown RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 ACSM2AQ08AH3 577 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 ASAH1Q13510 395 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 RPS26P11Q5JNZ5 115 aaPredicted RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 RNF219Q5W0B1 726 aaPredicted RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 ACSM2BQ68CK6 577 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 IL20RBQ6UXL0 311 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 RFLNAQ6ZTI6 216 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 KRT74Q7RTS7 529 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 DENND6BQ8NEG7 585 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 USP7Q93009 1102 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 CIDECQ96AQ7 238 aaPredicted RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 PSKH2Q96QS6 385 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms