RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ADGRD2Q7Z7M1 963 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 SMRP1Q8NCR6 262 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 ZC3HAV1LQ96H79 300 aaKnown RBP4.84□□□□□ -1.64
SCN1A-218ENST00000640036 SH3YL1Q96HL8 342 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-218ENST00000640036 BMFQ96LC9 184 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 KCTD14Q9BQ13 255 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-218ENST00000640036 CAB39LQ9H9S4 337 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 MAGEE1Q9HCI5 957 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-218ENST00000640036 CRNNQ9UBG3 495 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-218ENST00000640036 TPRKBQ9Y3C4 175 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.84□□□□□ -1.648e-7■■■■□ 21.2
SCN1A-218ENST00000640036 TLCD2A6NGC4 264 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF860A6NHJ4 632 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ANXA2P2A6NMY6 339 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TFE3P19532 575 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 APLNRP35414 380 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SLC1A3P43003 542 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TRAF2Q12933 501 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 GPR68Q15743 365 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 C10orf62Q5T681 223 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PIWIL4Q7Z3Z4 852 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 OR4C6Q8NH72 309 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 OR52E6Q96RD3 313 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 C1orf50Q9BV19 199 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 EGLN1Q9GZT9 426 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SAP130Q9H0E3 1048 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF407Q9C0G0 2248 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 GMNCA6NCL1 334 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PRORSD1PA6NEY8 169 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 K7EPI3 171 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SOX1O00570 391 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 UBFD1O14562 309 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ETS1P14921 441 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CD247P20963 164 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 MAGEA2P43356 314 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CCT3P49368 545 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 GFOD2Q3B7J2 385 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 VHLLQ6RSH7 139 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SPATA21Q7Z572 469 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SYVN1Q86TM6 617 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TMPRSS12Q86WS5 348 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 MCATQ8IVS2 390 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CPNE9Q8IYJ1 553 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 UXS1Q8NBZ7 420 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ANKK1Q8NFD2 765 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SPATA22Q8NHS9 363 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CPT1CQ8TCG5 803 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PIH1D2Q8WWB5 315 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 RELTQ969Z4 430 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PPP1R14BQ96C90 147 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CHFRQ96EP1 664 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PCYT2Q99447 389 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF559Q9BR84 538 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM168Q9H0V1 697 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 DECR2Q9NUI1 292 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 WASF3Q9UPY6 502 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 FAM96BQ9Y3D0 163 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PROM1O43490 865 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CACNG3O60359 315 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 UGT2B17O75795 530 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SEC24AO95486 1093 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 WNT11O96014 354 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 HOXB9P17482 250 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PPP3R1P63098 170 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CRADDP78560 199 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ST3GAL4Q11206 333 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 RUNX2Q13950 521 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 MYBPC3Q14896 1274 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PLGLAQ15195 96 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF630Q2M218 657 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 YOD1Q5VVQ6 348 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SYPL2Q5VXT5 272 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PTRH1Q86Y79 214 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ETFBKMTQ8IXQ9 262 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SFRP1Q8N474 314 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 IL17RCQ8NAC3 791 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CYGBQ8WWM9 190 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 FIG4Q92562 907 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 VRK1Q99986 396 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PIF1Q9H611 641 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 XKR8Q9H6D3 395 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 EHD3Q9NZN3 535 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TCAF1Q9Y4C2 921 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ATP6AP2A0A1C7CYW4 349 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 EFCAB10A6NFE3 127 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 METTL12A8MUP2 240 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ARHGEF33A8MVX0 844 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TGFB1I1O43294 461 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ATP6AP2O75787 350 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TCN1P20061 433 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 HOXA11P31270 313 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 GKP32189 559 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 BDKRB1P46663 353 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ENTPD1P49961 510 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ABRAXAS2Q15018 415 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 MEP1AQ16819 746 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM53Q6P2H8 277 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms