RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CARFQ8N187 725 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 ZCCHC7Q8N3Z6 543 aaKnown RBP17.52■□□□□ 0.4
CLN3-254ENST00000637050 DNAJC22Q8N4W6 341 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 EFCAB3Q8N7B9 438 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 DNAJB8Q8NHS0 232 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 CCDC74AQ96AQ1 378 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 SMIM10Q96HG1 83 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 CHRNA10Q9GZZ6 450 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 RMND5AQ9H871 391 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 FAM120CQ9NX05 1096 aaKnown RBP17.52■□□□□ 0.4
CLN3-254ENST00000637050 TMEM181Q9P2C4 612 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 R4GN57 208 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 URADA6NGE7 173 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 TNFRSF10AO00220 468 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 KCNH1O95259 989 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 C9P02748 559 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 SLC6A2P23975 617 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 CD1CP29017 333 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 CFHR1Q03591 330 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 KLC1Q07866 573 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 CEACAM7Q14002 265 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 ZC3H12BQ5HYM0 836 aaKnown RBP17.52■□□□□ 0.39
CLN3-254ENST00000637050 MRM1Q6IN84 353 aaKnown RBP17.52■□□□□ 0.39
CLN3-254ENST00000637050 ANKRD26P1Q6NSI1 321 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 SPRED1Q7Z699 444 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 HPS6Q86YV9 775 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 KIAA2013Q8IYS2 634 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 ZNF655Q8N720 491 aaPredicted RBP17.52■□□□□ 0.39
CLN3-254ENST00000637050 Q8N9G6 341 aaPredicted RBP17.52■□□□□ 0.39
CLN3-254ENST00000637050 ACOT4Q8N9L9 421 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 OR8K5Q8NH50 307 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 UTP15Q8TED0 518 aaKnown RBP17.52■□□□□ 0.39
CLN3-254ENST00000637050 ITCHQ96J02 903 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 DUSP26Q9BV47 211 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 KCNH6Q9H252 994 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 SMOC1Q9H4F8 434 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 ABCD2Q9UBJ2 740 aa17.52■□□□□ 0.39
CLN3-254ENST00000637050 LAMA1P25391 3075 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 ARID1BQ8NFD5 2236 aaPredicted RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 IGHV5-51A0A0C4DH38 117 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 A8MUI8 341 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 PRR33A8MZF0 331 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 ZSCAN9O15535 394 aaPredicted RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 HCRTR1O43613 425 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 ZNF888P0CJ79 500 aaPredicted RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 ENGP17813 658 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 SLC7A2P52569 658 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 HNRNPFP52597 415 aaKnown RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 RAB8AP61006 207 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 CCDC6Q16204 474 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 ZNF385BQ569K4 471 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 PLA2G2CQ5R387 149 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 LRIF1Q5T3J3 769 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 DGLUCYQ7Z3D6 616 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 PLXDC1Q8IUK5 500 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 MCATQ8IVS2 390 aaKnown RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 SLC15A3Q8IY34 581 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 EID2Q8N6I1 236 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 CGREF1Q99674 301 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 GTPBP2Q9BX10 602 aaKnown RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 BHLHE41Q9C0J9 482 aaPredicted RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 DENND2DQ9H6A0 471 aaPredicted RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 ADA2Q9NZK5 511 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 NEUROG3Q9Y4Z2 214 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 PCDHA9Q9Y5H5 950 aa17.51■□□□□ 0.39
CLN3-254ENST00000637050 MN1Q10571 1320 aaPredicted RBP17.51■□□□□ 0.39
CLN3-254ENST00000637050 A0A0C4DFX4 3053 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 A0A096LPI6 279 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 EME2A4GXA9 379 aaPredicted RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 KHNYNO15037 678 aaKnown RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 TBX19O60806 448 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 ERN1O75460 977 aaKnown RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 SORBS2O94875 1100 aaKnown RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 B3GALT4O96024 378 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 FAM58BPP0C7Q3 252 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 DDCP20711 480 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 CSF2RBP32927 897 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 GABRA4P48169 554 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 VSX2P58304 361 aaPredicted RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 SNRPNP63162 240 aaKnown RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 PLIN5Q00G26 463 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 SLC9A5Q14940 896 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 HEPACAMQ14CZ8 416 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 AMZ1Q400G9 498 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 C6orf10Q5SRN2 563 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 NANOGP8Q6NSW7 305 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 GUSBP11Q6P575 273 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 WDR74Q6RFH5 385 aaPredicted RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 NET1Q7Z628 596 aaPredicted RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 CSNK1A1LQ8N752 337 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 DNAJB14Q8TBM8 379 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 TMEM125Q96AQ2 219 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 PPCDCQ96CD2 204 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 ZNF764Q96H86 408 aaPredicted RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 ROGDIQ9GZN7 287 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 PAIP1Q9H074 479 aaKnown RBP17.5■□□□□ 0.39
CLN3-254ENST00000637050 NANOGQ9H9S0 305 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 ATAD3AQ9NVI7 634 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 SH3BP4Q9P0V3 963 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 SEMA5BQ9P283 1151 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms