RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 NPFFR2Q9Y5X5 522 aa13.44□□□□□ -0.26
CLN3-249ENST00000636685 GALR3O60755 368 aaPredicted RBP13.43□□□□□ -0.26
CLN3-249ENST00000636685 NIPSNAP2O75323 286 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 EPPINO95925 133 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 SYF2O95926 243 aaKnown RBP13.43□□□□□ -0.26
CLN3-249ENST00000636685 SERPINC1P01008 464 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 CATP04040 527 aaKnown RBP13.43□□□□□ -0.26
CLN3-249ENST00000636685 CR1P17927 2039 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 TTPAP49638 278 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 DMTNQ08495 405 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 KCNJ11Q14654 390 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 HERC3Q15034 1050 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 HYAL4Q2M3T9 481 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 KLHL38Q2WGJ6 581 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 ACSF3Q4G176 576 aaPredicted RBP13.43□□□□□ -0.26
CLN3-249ENST00000636685 DEFB134Q4QY38 66 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 ACSBG2Q5FVE4 666 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 CAPN13Q6MZZ7 669 aaPredicted RBP13.43□□□□□ -0.26
CLN3-249ENST00000636685 FAM47EQ6ZV65 393 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 ZNF740Q8NDX6 193 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 PPP1R14CQ8TAE6 165 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 KRT35Q92764 455 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 VMP1Q96GC9 406 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 SCYL1Q96KG9 808 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 RASL10BQ96S79 203 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 CCDC77Q9BR77 488 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 AARSD1Q9BTE6 412 aaKnown RBP13.43□□□□□ -0.26
CLN3-249ENST00000636685 PRDM9Q9NQV7 894 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 GALPQ9UBC7 116 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 RIMKLBQ9ULI2 386 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 SH2B3Q9UQQ2 575 aa13.43□□□□□ -0.26
CLN3-249ENST00000636685 EIF3LQ9Y262 564 aaKnown RBP13.43□□□□□ -0.26
CLN3-249ENST00000636685 SH3D21A4FU49 640 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 WWP2O00308 870 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 CD3EAPO15446 510 aaKnown RBP13.42□□□□□ -0.26
CLN3-249ENST00000636685 NDUFS3O75489 264 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 ZFAND5O76080 213 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 IL2RAP01589 272 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 GYPCP04921 128 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 RPS3P23396 243 aaKnown RBP eCLIP13.42□□□□□ -0.266e-6■□□□□ 10.6
CLN3-249ENST00000636685 ATP5DP30049 168 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 TIMP3P35625 211 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 GPR143P51810 404 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 C10orf62Q5T681 223 aaPredicted RBP13.42□□□□□ -0.26
CLN3-249ENST00000636685 KIAA0930Q6ICG6 404 aaPredicted RBP13.42□□□□□ -0.26
CLN3-249ENST00000636685 HEPHL1Q6MZM0 1159 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 RTL4Q6ZR62 310 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 SPNS2Q8IVW8 549 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 MAPK1IP1LQ8NDC0 245 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 WDR83Q9BRX9 315 aaKnown RBP13.42□□□□□ -0.26
CLN3-249ENST00000636685 SLC6A15Q9H2J7 730 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 RHBGQ9H310 441 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 UBTD1Q9HAC8 227 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 PNO1Q9NRX1 252 aaKnown RBP13.42□□□□□ -0.26
CLN3-249ENST00000636685 SPTLC3Q9NUV7 552 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 SAMD15Q9P1V8 674 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 ZFATQ9P243 1243 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 ADGRE2Q9UHX3 823 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 PCDHGB3Q9Y5G1 929 aa13.42□□□□□ -0.26
CLN3-249ENST00000636685 RAI1Q7Z5J4 1906 aaPredicted RBP13.42□□□□□ -0.26
CLN3-249ENST00000636685 SMTNL1A8MU46 457 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 PJA2O43164 708 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 PSMD3O43242 534 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 AKR1B10O60218 316 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 RFPL3SP0C7P2 107 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 SLC35G6P0C7Q6 338 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 CCL3P10147 92 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 ALOX12P18054 663 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 ADRA1DP25100 572 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 PPP2R1BP30154 601 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 FMO4P31512 558 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 PTH2RP49190 550 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 CDH17Q12864 832 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 ACKR1Q16570 336 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 HECTD2Q5U5R9 776 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 LRRC6Q86X45 466 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 LACC1Q8IV20 430 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 FAM71DQ8N9W8 422 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 ISL2Q96A47 359 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 PDLIM2Q96JY6 352 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 BIRC8Q96P09 236 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 GBP4Q96PP9 640 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 SACM1LQ9NTJ5 587 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 LMBRD1Q9NUN5 540 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 JKAMPQ9P055 326 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 C6orf203Q9P0P8 240 aaPredicted RBP13.41□□□□□ -0.26
CLN3-249ENST00000636685 MYOTQ9UBF9 498 aa13.41□□□□□ -0.26
CLN3-249ENST00000636685 CASKO14936 926 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 SIAH2O43255 324 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 HRH2P25021 359 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 IMPA1P29218 277 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 GRIA1P42261 906 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 TRPC1P48995 793 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 SIX1Q15475 284 aaPredicted RBP13.4□□□□□ -0.26
CLN3-249ENST00000636685 ABHD13Q7L211 337 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 LINC00523Q86TU6 105 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 HIPK1Q86Z02 1210 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 MFSD9Q8NBP5 474 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 PANX2Q96RD6 677 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 RBM24Q9BX46 236 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms