RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 ANKRD46Q86W74 232 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 GAL3ST3Q96A11 431 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 CCDC115Q96NT0 180 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 KLHL25Q9H0H3 589 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 SLC25A37Q9NYZ2 338 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 LRIT1Q9P2V4 623 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 PCDHB14Q9Y5E9 798 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 RNF215Q9Y6U7 377 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 A0A1B0GTQ1 180 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 URADA6NGE7 173 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 RNASET2O00584 256 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 NUDT21O43809 227 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 TMPRSS11DO60235 418 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 TBX19O60806 448 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 DDCP20711 480 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 CDH3P22223 829 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 LIPEQ05469 1076 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 BNIP2Q12982 314 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 CCDC6Q16204 474 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 MANEAQ5SRI9 462 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 MSRB3Q8IXL7 192 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 ZCCHC7Q8N3Z6 543 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 NATD1Q8N6N6 113 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 CEP76Q8TAP6 659 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 RERGQ96A58 199 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 PANX1Q96RD7 426 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 RAB33BQ9H082 229 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 MIEF1Q9NQG6 463 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 C1GALT1Q9NS00 363 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 NEUROG3Q9Y4Z2 214 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 SPAG17Q6Q759 2223 aa16.8■□□□□ 0.28
SHKBP1-224ENST00000600718 YKT6O15498 198 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 GUCY1B2O75343 617 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 STAMBPO95630 424 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 FAM58BPP0C7Q3 252 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 HOXB9P17482 250 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 HIST1H1TP22492 207 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 ATP5A1P25705 553 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 EPHA8P29322 1005 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 PTPN6P29350 595 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 BLMHQ13867 455 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 SLC9A5Q14940 896 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 GON4LQ3T8J9 2241 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 IRGCQ6NXR0 463 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 ZNF793Q6ZN11 406 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 ZNF655Q8N720 491 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 ENDOVQ8N8Q3 282 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 TRAPPC9Q96Q05 1148 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 TRIM8Q9BZR9 551 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 ROGDIQ9GZN7 287 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 PCDHAC1Q9H158 963 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 ALG2Q9H553 416 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 SLC24A3Q9HC58 644 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 NLGN3Q9NZ94 848 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 EPHA6Q9UF33 1036 aa16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 TNRC6BQ9UPQ9 1833 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-224ENST00000600718 A0A0G2JN53 185 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 H0YGG7 62 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 KRT36O76013 467 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 SP9P0CG40 484 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 DRD2P14416 443 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 ST6GAL1P15907 406 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 GLB1P16278 677 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 GCKP35557 465 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 GSK3BP49841 420 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 ARF3P61204 181 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 SLAMF1Q13291 335 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 HLA-BQ31612 363 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 ZNF385BQ569K4 471 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 SLC35F3Q8IY50 421 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 AMER3Q8N944 861 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 ACOT4Q8N9L9 421 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 KCT2Q8NC54 265 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 ZBTB44Q8NCP5 570 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 SLC26A7Q8TE54 656 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 ZNF764Q96H86 408 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 KCTD14Q9BQ13 255 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 ECSITQ9BQ95 431 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 THUMPD3Q9BV44 507 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 DUSP23Q9BVJ7 150 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 MUC13Q9H3R2 512 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 EPB41L1Q9H4G0 881 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 IL21RQ9HBE5 538 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 LOC105369274A0A096LPK9 316 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 LOC102723532A0A0G2JNH3 316 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 C4orf51C9J302 202 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 ZSCAN9O15535 394 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 PRAMEF10O60809 474 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 CPSF4O95639 269 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 B3GALT4O96024 378 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 SMIM10L1P0DMW3 83 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 AVPR2P30518 371 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 CDKN2CP42773 168 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 GPR3P46089 330 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 MTPNP58546 118 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 SELPLGQ14242 412 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 MRM1Q6IN84 353 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 FRMPD2BQ6IN97 320 aa16.78■□□□□ 0.28
SHKBP1-224ENST00000600718 DNAJC14Q6Y2X3 702 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms