RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 PROM1O43490 865 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 OR1F1O43749 312 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 CDC40O60508 579 aaKnown RBP eCLIP5.68□□□□□ -1.5
VRK3-220ENST00000600259 ZNF354AO60765 605 aaPredicted RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 ITGA10O75578 1167 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 FAM155BO75949 473 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 IPO7O95373 1038 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 TBX6O95947 436 aaPredicted RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 C8GP07360 202 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 SLC35G6P0C7Q6 338 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 ZNF888P0CJ79 500 aaPredicted RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 MLNP12872 115 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 FOSL1P15407 271 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 JAK1P23458 1154 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 PPP2R1BP30154 601 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 AHRP35869 848 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 SLC1A2P43004 574 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 CCR8P51685 355 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 HNRNPFP52597 415 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 PGGT1BP53609 377 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 CDKN2DP55273 166 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 RAB8AP61006 207 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 PPIAP62937 165 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 ADAM8P78325 824 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 FOLH1Q04609 750 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 DHX9Q08211 1270 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 FOXO1Q12778 655 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 DHX34Q14147 1143 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 HYAL4Q2M3T9 481 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 SEL1L2Q5TEA6 688 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 DUPD1Q68J44 220 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 PAQR3Q6TCH7 311 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 ACAD11Q709F0 780 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 TRILQ7L0X0 811 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 SCUBE1Q8IWY4 988 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 CYP4Z2PQ8N1L4 340 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 CA13Q8N1Q1 262 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 PSD4Q8NDX1 1056 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 TMEM52Q8NDY8 209 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 B3GNT7Q8NFL0 401 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 OR2M7Q8NG81 312 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 OR5M9Q8NGP3 310 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 NEIL2Q969S2 332 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 ZNF669Q96BR6 464 aaPredicted RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 PYCR2Q96C36 320 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 BAG1Q99933 345 aaPredicted RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 HAUS8Q9BT25 410 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 LIN28AQ9H9Z2 209 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 RASSF1Q9NS23 344 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 DNAJB12Q9NXW2 375 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 KCMF1Q9P0J7 381 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 Q9UFV3 132 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 ST6GALNAC2Q9UJ37 374 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 ZFP69BQ9UJL9 534 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 IKZF3Q9UKT9 509 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 YARS2Q9Y2Z4 477 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 LIPGQ9Y5X9 500 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 COMMD10Q9Y6G5 202 aa5.68□□□□□ -1.5
VRK3-220ENST00000600259 FN1P02751 2386 aaKnown RBP5.68□□□□□ -1.5
VRK3-220ENST00000600259 TRBV11-1A0A0K0K1C0 115 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 CTAGE9A4FU28 777 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 OR14I1A6ND48 311 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 SYT5O00445 386 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 FCHO1O14526 889 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 SNPHO15079 494 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 NDUFS4O43181 175 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 ZFAND5O76080 213 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 MYO1DO94832 1006 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 OR6B1O95007 311 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 AHSGP02765 367 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 SERPINA6P08185 405 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 CELA3AP09093 270 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 RNH1P13489 461 aaKnown RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 PAMP19021 973 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 CNR1P21554 472 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 CCND1P24385 295 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 ACVR2AP27037 513 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 GRK3P35626 688 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 ZFP36L2P47974 494 aaKnown RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 CLCN2P51788 898 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 REEP5Q00765 189 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 THOC5Q13769 683 aaKnown RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 SNTB1Q13884 538 aaKnown RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 TERF2Q15554 542 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 TRIP13Q15645 432 aaPredicted RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 ZNF750Q32MQ0 723 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 HSP90AA5PQ58FG0 334 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 RBM20Q5T481 1227 aaKnown RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 NIPAL1Q6NVV3 410 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 TTC27Q6P3X3 843 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 POMZP3Q6PJE2 187 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 ADGRD1Q6QNK2 874 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 ARSKQ6UWY0 536 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 RGS9BPQ6ZS82 235 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 SEM1Q6ZVN7 128 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 TMEM200AQ86VY9 491 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 LMNTD2Q8IXW0 634 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 CLYBLQ8N0X4 340 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 TMEM156Q8N614 296 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 TMEM251Q8N6I4 163 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms