RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 RAPH1Q70E73 1250 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 LRRC70Q7Z2Q7 622 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 ISCA2Q86U28 154 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 BCORP1Q8N888 145 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 SNX31Q8N9S9 440 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 MDS2Q8NDY4 140 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 ELP5Q8TE02 316 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 UBTD2Q8WUN7 234 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 KCTD4Q8WVF5 259 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 CCT6BQ92526 530 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 NR4A3Q92570 626 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 PTCHD1Q96NR3 888 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 SIGLEC12Q96PQ1 595 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 CSF3RQ99062 836 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 HES7Q9BYE0 225 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.24□□□□□ -0.45
LIG1-212ENST00000596549 RHBGQ9H310 441 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 NT5DC2Q9H857 520 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 CNOT10Q9H9A5 744 aaKnown RBP12.24□□□□□ -0.45
LIG1-212ENST00000596549 ANKRD10Q9NXR5 420 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 NINJ2Q9NZG7 142 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 NUDT4Q9NZJ9 180 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 CD274Q9NZQ7 290 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 ZNF490Q9ULM2 529 aaPredicted RBP12.24□□□□□ -0.45
LIG1-212ENST00000596549 SLC5A6Q9Y289 635 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 SPTAN1Q13813 2472 aaKnown RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 CNTRLQ7Z7A1 2325 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 CLGNO14967 610 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 CCNT2O60583 730 aaKnown RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 PRMT3O60678 531 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 PRAMEF2O60811 474 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 CLEC3AO75596 197 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 URI1O94763 535 aaPredicted RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 CLDN1O95832 211 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 MTHFD2P13995 350 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 MST1P26927 711 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 CERS1P27544 350 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 ECHS1P30084 290 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 BTN3A2P78410 334 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 TUBA3CQ13748 450 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 XKR6Q5GH73 641 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 TUBA3EQ6PEY2 450 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 SCUBE1Q8IWY4 988 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 KRT78Q8N1N4 520 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 NOA1Q8NC60 698 aaKnown RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 NFAM1Q8NET5 270 aaPredicted RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 TTLQ8NG68 377 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 OR2L5Q8NG80 312 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 NXNL1Q96CM4 212 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 PTCD3Q96EY7 689 aaKnown RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 ZNF354BQ96LW1 612 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 CD244Q9BZW8 370 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 PITHD1Q9GZP4 211 aaPredicted RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 CLK4Q9HAZ1 481 aaKnown RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 PRDM9Q9NQV7 894 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 SNX15Q9NRS6 342 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 DMGDHQ9UI17 866 aaKnown RBP12.23□□□□□ -0.45
LIG1-212ENST00000596549 TEKT2Q9UIF3 430 aa12.23□□□□□ -0.45
LIG1-212ENST00000596549 GABRR3A8MPY1 467 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 SUPT3HB4E1H0 165 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 SUPT3HO75486 399 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 WISP2O76076 250 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 RASAL1O95294 804 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 DDAH2O95865 285 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 ALDOAP04075 364 aaKnown RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 LTA4HP09960 611 aaKnown RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 PPP2R1BP30154 601 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 PLA2G16P53816 162 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 RAB38P57729 211 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 KCNK10P57789 538 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 CHIT1Q13231 466 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 MEP1AQ16819 746 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 WHAMMP3Q1A5X7 153 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 ZNF766Q5HY98 468 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 MROH9Q5TGP6 573 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 ZNF468Q5VIY5 522 aaPredicted RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 ABHD17CQ6PCB6 329 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 ZNF793Q6ZN11 406 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 TBC1D1Q86TI0 1168 aaPredicted RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 FAM47BQ8NA70 645 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 APCDD1LQ8NCL9 501 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 STAG3L4Q8TBR4 150 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 MRRFQ96E11 262 aaKnown RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 SCMH1Q96GD3 660 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 SEC16BQ96JE7 1060 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 C5orf34Q96MH7 638 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 EFCAB11Q9BUY7 163 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 NPLQ9BXD5 320 aaPredicted RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 CAPS2Q9BXY5 557 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 MS4A8Q9BY19 250 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 REXO4Q9GZR2 422 aaKnown RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 CDC42EP4Q9H3Q1 356 aaKnown RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 NMRAL1Q9HBL8 299 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 STMN3Q9NZ72 180 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 ZNF223Q9UK11 482 aaPredicted RBP12.22□□□□□ -0.45
LIG1-212ENST00000596549 OSGIN2Q9Y236 505 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 MMACHCQ9Y4U1 282 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 DOPEY1Q5JWR5 2465 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 SVILO95425 2214 aa12.22□□□□□ -0.45
LIG1-212ENST00000596549 ANKDD1BA6NHY2 528 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms