RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PAICSP22234 425 aaKnown RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 ITGA1P56199 1179 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PLGLB1Q02325 96 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 ADGRE1Q14246 886 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 C6orf136Q5SQH8 315 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 OR52E8Q6IFG1 317 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 GRHL2Q6ISB3 625 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 TTC33Q6PID6 262 aaPredicted RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 EIF3MQ7L2H7 374 aaKnown RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 ZNF527Q8NB42 609 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 DACH2Q96NX9 599 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 CDC6Q99741 560 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 TM9SF3Q9HD45 589 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 SLC39A1Q9NY26 324 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PCTPQ9UKL6 214 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 GTF2A1LQ9UNN4 478 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 H0Y8X5 98 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 I6L893 689 aaPredicted RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 AREL1O15033 823 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 UGDHO60701 494 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 UGT2B17O75795 530 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PGM3O95394 542 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 ZBTB11O95625 1053 aaPredicted RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 S100A6P06703 90 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 HSMCR30P0CW71 290 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 EIPR1Q53HC9 387 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 AGBL4Q5VU57 503 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 SLC30A8Q8IWU4 369 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 FAM217AQ8IXS0 508 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 OR52B6Q8NGF0 335 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 OR10A6Q8NH74 314 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 OR5K2Q8NHB8 316 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 ZNF480Q8WV37 535 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 CAPSLQ8WWF8 208 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 KLHL6Q8WZ60 621 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PTERQ96BW5 349 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 NMD3Q96D46 503 aaKnown RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 PRR11Q96HE9 360 aaPredicted RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 GORASP1Q9BQQ3 440 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 YIPF4Q9BSR8 244 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 TAPBPLQ9BX59 468 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 CHRDQ9H2X0 955 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 SMOXQ9NWM0 555 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 IFNW1P05000 195 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 RPLP0P05388 317 aaKnown RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 UGT2B15P54855 530 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 DLG1Q12959 904 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 C14orf28Q4W4Y0 310 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 RANBP3LQ86VV4 465 aaPredicted RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 PPP1R3BQ86XI6 285 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 MINDY2Q8NBR6 621 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 ELF4Q99607 663 aaPredicted RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 LPAR4Q99677 370 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 SDHAF3Q9NRP4 125 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 NUMA1Q14980 2115 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 TMEM202A6NGA9 273 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 MCIDASD6RGH6 385 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 CHRM5P08912 532 aaPredicted RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 CD63P08962 238 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 DGKQP52824 942 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 BNC1Q01954 994 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 ZNF33BQ06732 778 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 KHDRBS2Q5VWX1 349 aaKnown RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 LRRC69Q6ZNQ3 347 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 NET1Q7Z628 596 aaPredicted RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 ZFAND4Q86XD8 727 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 DTWD2Q8NBA8 298 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 ATP6V1C2Q8NEY4 427 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 CADM4Q8NFZ8 388 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 COQ10AQ96MF6 247 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 PITHD1Q9GZP4 211 aaPredicted RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 RIBC2Q9H4K1 309 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 TMEM9BQ9NQ34 198 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 KNTC1P50748 2209 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 CLIC1O00299 241 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 RTCAO00442 366 aaKnown RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 GMFGO60234 142 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 ALPPP05187 535 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 CTSLP07711 333 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 DRD2P14416 443 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 C4BPBP20851 252 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 GGT5P36269 586 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 GMPRP36959 345 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 CCR10P46092 362 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 DSTNP60981 165 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 IL5RAQ01344 420 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 USF2Q15853 346 aaPredicted RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 RSBN1Q5VWQ0 802 aaPredicted RBP9.43□□□□□ -0.9
LIG3-216ENST00000593099 OR4C11Q6IEV9 310 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.43□□□□□ -0.9
LIG3-216ENST00000593099 OFCC1Q8IZS5 231 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 OR2L8Q8NGY9 312 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 OR8K5Q8NH50 307 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 APOL4Q9BPW4 351 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 KLHL4Q9C0H6 718 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 EPB41L4BQ9H329 900 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 P2RX2Q9UBL9 471 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 PCDHGA4Q9Y5G9 962 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 OR51B4Q9Y5P0 310 aa9.43□□□□□ -0.9
LIG3-216ENST00000593099 BRCA1P38398 1863 aaKnown RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms