RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 A0A0G2JNG1 304 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 SPTY2D1-AS1A0A0U1RR47 76 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 A0A1W2PPC4 97 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 C7orf72A4D263 438 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 KIR2DS3K7RE56 304 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 ACOX3O15254 700 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 EML2O95834 649 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 SERPIND1P05546 499 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 ZNF23P17027 643 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 PEBP1P30086 187 aaKnown RBP13.53□□□□□ -0.24
LIG3-205ENST00000585941 KDELR2P33947 212 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 PCGF2P35227 344 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 BCL6P41182 706 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 SSR2P43308 183 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 RPS15AP62244 130 aaKnown RBP13.53□□□□□ -0.24
LIG3-205ENST00000585941 TFF2Q03403 129 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 GAB1Q13480 694 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 BIRC2Q13490 618 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 MYBPC3Q14896 1274 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 KIR2DS5Q14953 304 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 C6orf52Q5T4I8 152 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 PTCRAQ6ISU1 281 aaPredicted RBP13.53□□□□□ -0.24
LIG3-205ENST00000585941 IYDQ6PHW0 289 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 ENPP6Q6UWR7 440 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 ZNF551Q7Z340 670 aaPredicted RBP13.53□□□□□ -0.24
LIG3-205ENST00000585941 NRROSQ86YC3 692 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 PTOV1Q86YD1 416 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIG3-205ENST00000585941 ADGRF3Q8IZF5 1079 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 ST13P4Q8IZP2 240 aaPredicted RBP13.53□□□□□ -0.24
LIG3-205ENST00000585941 ZCCHC7Q8N3Z6 543 aaKnown RBP13.53□□□□□ -0.24
LIG3-205ENST00000585941 C11orf65Q8NCR3 313 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 OR52N2Q8NGI0 321 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 OR5P2Q8WZ92 322 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 SDCCAG3Q96C92 435 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 KCNC2Q96PR1 638 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 SLC35A5Q9BS91 424 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 SORBS1Q9BX66 1292 aaKnown RBP13.53□□□□□ -0.24
LIG3-205ENST00000585941 GPR174Q9BXC1 333 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 SLC6A16Q9GZN6 736 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 NEUROD4Q9HD90 331 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 LHX9Q9NQ69 397 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 POT1Q9NUX5 634 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 TAS2R7Q9NYW3 318 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 DLGAP2Q9P1A6 1054 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 TAAR2Q9P1P5 351 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 ANKMY1Q9P2S6 941 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 PCDHGA4Q9Y5G9 962 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 ENTPD2Q9Y5L3 495 aa13.53□□□□□ -0.24
LIG3-205ENST00000585941 ARHGEF17Q96PE2 2063 aaPredicted RBP13.52□□□□□ -0.24
LIG3-205ENST00000585941 UNC80Q8N2C7 3258 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 A0A0A6YYD5 115 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 A6NHS1 94 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 HAT1O14929 419 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 ZW10O43264 779 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 SMNDC1O75940 238 aaKnown RBP eCLIP13.52□□□□□ -0.25
LIG3-205ENST00000585941 TNFAIP8O95379 198 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 CST1P01037 141 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 VIPP01282 170 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 EFNA1P20827 205 aaPredicted RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 UQCRC2P22695 453 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 STXBP1P61764 594 aaKnown RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 ELOAQ14241 798 aaKnown RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 PLCL1Q15111 1095 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 ADRM1Q16186 407 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 MPEG1Q2M385 716 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.52□□□□□ -0.25
LIG3-205ENST00000585941 NHSL2Q5HYW2 709 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 KIAA1614Q5VZ46 1190 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 UBE3DQ7Z6J8 389 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 PLD3Q8IV08 490 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 SLC30A8Q8IWU4 369 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 CHERPQ8IWX8 916 aaKnown RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 FBXL6Q8N531 539 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 OR2L5Q8NG80 312 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 CCL4L1Q8NHW4 92 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 CIDECQ96AQ7 238 aaPredicted RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 ZBED6CLQ96FA7 236 aaPredicted RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 CNBD2Q96M20 576 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 ANKRD60Q9BZ19 345 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 ASPSCR1Q9BZE9 553 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 CD320Q9NPF0 282 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 ACSS1Q9NUB1 689 aaPredicted RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 WNT16Q9UBV4 365 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 PNMA8BQ9ULN7 279 aaPredicted RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 CA14Q9ULX7 337 aa13.52□□□□□ -0.25
LIG3-205ENST00000585941 FAF1Q9UNN5 650 aaPredicted RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 MDC1Q14676 2089 aaKnown RBP13.52□□□□□ -0.25
LIG3-205ENST00000585941 PRAMEF33A0A0G2JMD5 474 aa13.51□□□□□ -0.25
LIG3-205ENST00000585941 RTCAO00442 366 aaKnown RBP13.51□□□□□ -0.25
LIG3-205ENST00000585941 GNGT2O14610 69 aa13.51□□□□□ -0.25
LIG3-205ENST00000585941 PDPK1O15530 556 aa13.51□□□□□ -0.25
LIG3-205ENST00000585941 HPRP00739 348 aa13.51□□□□□ -0.25
LIG3-205ENST00000585941 FAM58BPP0C7Q3 252 aa13.51□□□□□ -0.25
LIG3-205ENST00000585941 THEGLP0DJG4 465 aa13.51□□□□□ -0.25
LIG3-205ENST00000585941 CHI3L1P36222 383 aaPredicted RBP13.51□□□□□ -0.25
LIG3-205ENST00000585941 FRKP42685 505 aaPredicted RBP13.51□□□□□ -0.25
LIG3-205ENST00000585941 MAGEA2P43356 314 aa13.51□□□□□ -0.25
LIG3-205ENST00000585941 RPS9P46781 194 aaKnown RBP13.51□□□□□ -0.25
LIG3-205ENST00000585941 RXRGP48443 463 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms