RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 OR2W5A6NFC9 320 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 TGFB1P01137 390 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 C8orf89P0DMQ9 161 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 PCNAP12004 261 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 ATP5F1P24539 256 aaPredicted RBP18.21■□□□□ 0.51
SS18-208ENST00000577751 CRHR1P34998 444 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 DEKP35659 375 aaKnown RBP18.21■□□□□ 0.51
SS18-208ENST00000577751 PLA2G16P53816 162 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 HERVK_113P63132 956 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 SLC18A2Q05940 514 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 Q0VFX4 171 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 TRAF3Q13114 568 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 RUNX2Q13950 521 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 CPSF6Q16630 551 aaKnown RBP eCLIP18.21■□□□□ 0.51
SS18-208ENST00000577751 TMEM35AQ53FP2 167 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 ZNF678Q5SXM1 525 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 ASB18Q6ZVZ8 466 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 MYLK4Q86YV6 388 aaPredicted RBP18.21■□□□□ 0.51
SS18-208ENST00000577751 SRFBP1Q8NEF9 429 aaKnown RBP18.21■□□□□ 0.51
SS18-208ENST00000577751 WDR20Q8TBZ3 569 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 METTL21AQ8WXB1 218 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 ATP6V1E2Q96A05 226 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 CMTM7Q96FZ5 175 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 CDK15Q96Q40 435 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 SERINC2Q96SA4 455 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 ERVK-6Q9BXR3 956 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 ZNF700Q9H0M5 742 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 ZNF552Q9H707 407 aaPredicted RBP18.21■□□□□ 0.51
SS18-208ENST00000577751 PSD3Q9NYI0 1048 aa18.21■□□□□ 0.51
SS18-208ENST00000577751 A0A088AWK7 358 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 TLDC2A0PJX2 215 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 MAGEB17A8MXT2 336 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 RNH1P13489 461 aaKnown RBP18.2■□□□□ 0.5
SS18-208ENST00000577751 IMPDH1P20839 514 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 ZNF10P21506 573 aaPredicted RBP18.2■□□□□ 0.5
SS18-208ENST00000577751 JAK1P23458 1154 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 CCT5P48643 541 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 CCNG1P51959 295 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 PGDP52209 483 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 PRKAA2P54646 552 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 MTTPP55157 894 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 TGM3Q08188 693 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 PCOLCEQ15113 449 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 UNC50Q53HI1 259 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 DEPDC1Q5TB30 811 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 MFSD4BQ5TF39 518 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 KHDRBS2Q5VWX1 349 aaKnown RBP18.2■□□□□ 0.5
SS18-208ENST00000577751 CHSY3Q70JA7 882 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 RPS27LQ71UM5 84 aaKnown RBP18.2■□□□□ 0.5
SS18-208ENST00000577751 PTRH1Q86Y79 214 aaKnown RBP18.2■□□□□ 0.5
SS18-208ENST00000577751 RNF175Q8N4F7 328 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 REPS1Q96D71 796 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 KCNC2Q96PR1 638 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 TBCDQ9BTW9 1192 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 RBCK1Q9BYM8 510 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 ZNF160Q9HCG1 818 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 SEMA4BQ9NPR2 832 aaPredicted RBP18.2■□□□□ 0.5
SS18-208ENST00000577751 DMRT3Q9NQL9 472 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 C5AR2Q9P296 337 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 LGALS13Q9UHV8 139 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 GRID1Q9ULK0 1009 aa18.2■□□□□ 0.5
SS18-208ENST00000577751 G3BP2Q9UN86 482 aaKnown RBP18.2■□□□□ 0.5
SS18-208ENST00000577751 NSG1A0A0A6YYJ2 146 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 A0A1B0GTL3 188 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 PPP6CO00743 305 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 KLHL41O60662 606 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 CDC123O75794 336 aaPredicted RBP18.19■□□□□ 0.5
SS18-208ENST00000577751 SCELO95171 688 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 PROCP04070 461 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 KRT4P19013 534 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 ITGA3P26006 1051 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 CDH13P55290 713 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 CLCQ05315 142 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 EEF1A2Q05639 463 aaKnown RBP18.19■□□□□ 0.5
SS18-208ENST00000577751 ZRSR2Q15696 482 aaKnown RBP18.19■□□□□ 0.5
SS18-208ENST00000577751 GGTA1PQ4G0N0 100 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 QSOX2Q6ZRP7 698 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 LANCL3Q6ZV70 420 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 CPEB2Q7Z5Q1 589 aaKnown RBP18.19■□□□□ 0.5
SS18-208ENST00000577751 ANKRD37Q7Z713 158 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 HPS6Q86YV9 775 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 SLC22A9Q8IVM8 553 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 PARP9Q8IXQ6 854 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 OR4F6Q8NGB9 312 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 L3HYPDHQ96EM0 354 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 IMMP1LQ96LU5 166 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 TMEM237Q96Q45 408 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 MTERF1Q99551 399 aaKnown RBP18.19■□□□□ 0.5
SS18-208ENST00000577751 TMEM109Q9BVC6 243 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 ROGDIQ9GZN7 287 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 C19orf25Q9UFG5 118 aaPredicted RBP18.19■□□□□ 0.5
SS18-208ENST00000577751 ZNF225Q9UK10 706 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 PPT2Q9UMR5 302 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 ZNF451Q9Y4E5 1061 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 CFAP46Q8IYW2 2715 aa18.19■□□□□ 0.5
SS18-208ENST00000577751 FAM227AF5H4B4 570 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 G3V2L1 256 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 FOXE1O00358 373 aaPredicted RBP18.18■□□□□ 0.5
SS18-208ENST00000577751 SUV39H1O43463 412 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 B3GALT2O43825 422 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms