RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 NME2P1O60361 137 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 PRAMEF4O60810 478 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 SP1P08047 785 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 SLC35G6P0C7Q6 338 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 ZNF888P0CJ79 500 aaPredicted RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 ALOX12P18054 663 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 AGAP20933 346 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 IL10P22301 178 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 NME2P22392 152 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 CCND1P24385 295 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 TPP2P29144 1249 aaPredicted RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 TRHRP34981 398 aaPredicted RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 PTGER4P35408 488 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 FNTAP49354 379 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 CCR8P51685 355 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 GPR143P51810 404 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 HNRNPFP52597 415 aaKnown RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 OR4D2P58180 307 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 MLF1P58340 268 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 REEP5Q00765 189 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 HERC3Q15034 1050 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 SNCBQ16143 134 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.29□□□□□ -1.4
VPS53-213ENST00000572334 DEFB134Q4QY38 66 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 KRTCAP3Q53RY4 240 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 SPANXN3Q5MJ09 141 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 BEND6Q5SZJ8 279 aaPredicted RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 HECTD2Q5U5R9 776 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 PRAMEF9Q5VWM5 478 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 STEAP4Q687X5 459 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 DUPD1Q68J44 220 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 SLC25A25Q6KCM7 469 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 LRRC8EQ6NSJ5 796 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 XKRXQ6PP77 449 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 RPTNQ6XPR3 784 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 QSOX2Q6ZRP7 698 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 RPS19BP1Q86WX3 136 aaKnown RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 DOLPP1Q86YN1 238 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 MYO1HQ8N1T3 1032 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 MARVELD2Q8N4S9 558 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 CPSF7Q8N684 471 aaKnown RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 APCDD1LQ8NCL9 501 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 TMEM52Q8NDY8 209 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 SUN3Q8TAQ9 357 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 ACTRT1Q8TDG2 376 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 MED12Q93074 2177 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 ALKBH8Q96BT7 664 aaKnown RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 TBC1D20Q96BZ9 403 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 FBXL8Q96CD0 374 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 CERS2Q96G23 380 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 PDLIM5Q96HC4 596 aaKnown RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 OSBPL9Q96SU4 736 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 LPAR4Q99677 370 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 TREX2Q9BQ50 279 aaPredicted RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 UTP23Q9BRU9 249 aaKnown RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 HAUS8Q9BT25 410 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 MCMBPQ9BTE3 642 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 CAPS2Q9BXY5 557 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 FAM129AQ9BZQ8 928 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 DDX47Q9H0S4 455 aaKnown RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 TAS2R13Q9NYV9 303 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 LRFN1Q9P244 771 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 SUCOQ9UBS9 1254 aaKnown RBP6.29□□□□□ -1.4
VPS53-213ENST00000572334 MCM8Q9UJA3 840 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 ZFP69BQ9UJL9 534 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 NPIPA1Q9UND3 350 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 PSAT1Q9Y617 370 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 TEX264Q9Y6I9 313 aa6.29□□□□□ -1.4
VPS53-213ENST00000572334 PRRC2AP48634 2157 aaKnown RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 ACANP16112 2415 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 ABCA4P78363 2273 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 ITPR3Q14573 2671 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 CCDC189A1A4V9 331 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 ANKRD33BA6NCL7 494 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 TMEM200CA6NKL6 621 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 USP27XA6NNY8 438 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 PGRMC1O00264 195 aaKnown RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 CDC7O00311 574 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 NDC80O14777 642 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 PRKNO60260 465 aaPredicted RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 B4GALT2O60909 372 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 WISP3O95389 354 aaPredicted RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 TTC4O95801 387 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 GUCA1CO95843 209 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 CD46P15529 392 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 MAOAP21397 527 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 EEF1DP29692 281 aaKnown RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 PPP2R1BP30154 601 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 PTGER1P34995 402 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 AHRP35869 848 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 RGS4P49798 205 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 CLNS1AP54105 237 aaKnown RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 AP1S2P56377 157 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 IL2P60568 153 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 RAB8AP61006 207 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 ALDH6A1Q02252 535 aaKnown RBP6.28□□□□□ -1.4
VPS53-213ENST00000572334 RUNX2Q13950 521 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 ZNF460Q14592 562 aa6.28□□□□□ -1.4
VPS53-213ENST00000572334 SETDB1Q15047 1291 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms