RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	IL1RL2	Q9HB29	575 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	CATSPERZ	Q9NTU4	200 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	TUBA8	Q9NY65	449 aa	Predicted RBP	10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	SLC22A7	Q9Y694	548 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	MPDZ	O75970	2070 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	HEATR5B	Q9P2D3	2071 aa		10.88	□□□□□ -0.67
CLK3-222	ENST00000568232	IGKV3D-11	A0A0A0MRZ8	115 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	SMTNL1	A8MU46	457 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	CLDN4	O14493	209 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	CD3EAP	O15446	510 aa	Known RBP	10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	AKR1B10	O60218	316 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	GALR3	O60755	368 aa	Predicted RBP	10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	F12	P00748	615 aa	Predicted RBP	10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	FMO4	P31512	558 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	HSD17B2	P37059	387 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	TTPA	P49638	278 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	KLHL38	Q2WGJ6	581 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	CAPN13	Q6MZZ7	669 aa	Predicted RBP	10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	PODNL1	Q6PEZ8	512 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	QSOX2	Q6ZRP7	698 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	FAM47E	Q6ZV65	393 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	AFAP1L2	Q8N4X5	818 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	PIGT	Q969N2	578 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	NCLN	Q969V3	563 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	BIRC8	Q96P09	236 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	ZFAT	Q9P243	1243 aa		10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	ZNF629	Q9UEG4	869 aa	Predicted RBP	10.87	□□□□□ -0.67
CLK3-222	ENST00000568232	CHD3	Q12873	2000 aa	Known RBP	10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	ZNF839	A8K0R7	811 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	EEF1E1-BLOC1S5	C9J1V9	151 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	WWP2	O00308	870 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	PJA2	O43164	708 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	EEF1E1	O43324	174 aa	Known RBP	10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	NDUFS3	O75489	264 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	GOSR1	O95249	250 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	CAT	P04040	527 aa	Known RBP	10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	RFPL3S	P0C7P2	107 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	PTMS	P20962	102 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	RPS3	P23396	243 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	ADRA1D	P25100	572 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	PPP2R1B	P30154	601 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	GPR143	P51810	404 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	GDF10	P55107	478 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	SORD	Q00796	357 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	CDH17	Q12864	832 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	HERC3	Q15034	1050 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	AARS2	Q5JTZ9	985 aa	Known RBP	10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	AADACL2	Q6P093	401 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	MAATS1	Q7Z4T9	603 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	MAPK1IP1L	Q8NDC0	245 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	THAP11	Q96EK4	314 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	SCYL1	Q96KG9	808 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	RASL10B	Q96S79	203 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	BPIFA3	Q9BQP9	254 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	NAT10	Q9H0A0	1025 aa	Known RBP	10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	SLC6A15	Q9H2J7	730 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	RHBG	Q9H310	441 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	PRDM9	Q9NQV7	894 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	PNO1	Q9NRX1	252 aa	Known RBP	10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	FAM114A2	Q9NRY5	505 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	RIMKLB	Q9ULI2	386 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	NPFFR2	Q9Y5X5	522 aa		10.86	□□□□□ -0.67
CLK3-222	ENST00000568232	CES2	O00748	559 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	PHF1	O43189	567 aa	Predicted RBP	10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	HCN1	O60741	890 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	ZNF354A	O60765	605 aa	Predicted RBP	10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	ZFAND5	O76080	213 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	EPPIN	O95925	133 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	SLC35G6	P0C7Q6	338 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	CCL3	P10147	92 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	CHRM3	P20309	590 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	ATP5D	P30049	168 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	PIGA	P37287	484 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	TRPC1	P48995	793 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	MEF2A	Q02078	507 aa	Predicted RBP	10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	TRIM14	Q14142	442 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	HYAL4	Q2M3T9	481 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	ACSF3	Q4G176	576 aa	Predicted RBP	10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	C10orf62	Q5T681	223 aa	Predicted RBP	10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	CLEC17A	Q6ZS10	378 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	LINC00523	Q86TU6	105 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	LRRC6	Q86X45	466 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	REXO1L1P	Q8IX06	675 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	GPALPP1	Q8IXQ4	340 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	FBXW8	Q8N3Y1	598 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	PPP1R14C	Q8TAE6	165 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	SMPDL3B	Q92485	455 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	VMP1	Q96GC9	406 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	PDLIM2	Q96JY6	352 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	DACH2	Q96NX9	599 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	CHP1	Q99653	195 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	SLC30A3	Q99726	388 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	CCL19	Q99731	98 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	CCDC77	Q9BR77	488 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	WDR83	Q9BRX9	315 aa	Known RBP	10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	AARSD1	Q9BTE6	412 aa	Known RBP	10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	OSBPL8	Q9BZF1	889 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	CHRAC1	Q9NRG0	131 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	C6orf203	Q9P0P8	240 aa	Predicted RBP	10.85	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms