RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 C20orf27Q9GZN8 174 aa12.74□□□□□ -0.37
CLK3-218ENST00000566926 MKKSQ9NPJ1 570 aaPredicted RBP12.74□□□□□ -0.37
CLK3-218ENST00000566926 C14orf105Q9NVL8 296 aa12.74□□□□□ -0.37
CLK3-218ENST00000566926 SH2B3Q9UQQ2 575 aa12.74□□□□□ -0.37
CLK3-218ENST00000566926 CNTRLQ7Z7A1 2325 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 IGLV3-12A0A075B6K2 115 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 URADA6NGE7 173 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 PCDH17O14917 1159 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 P2RX6O15547 441 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 OR1F1O43749 312 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 LCMT2O60294 686 aaKnown RBP12.73□□□□□ -0.37
CLK3-218ENST00000566926 UGDHO60701 494 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 CNOT3O75175 753 aaKnown RBP12.73□□□□□ -0.37
CLK3-218ENST00000566926 CRCPO75575 148 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 WDR47O94967 919 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 SIX3O95343 332 aaPredicted RBP12.73□□□□□ -0.37
CLK3-218ENST00000566926 MED26O95402 600 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 NSA2O95478 260 aaKnown RBP12.73□□□□□ -0.37
CLK3-218ENST00000566926 CHEK2O96017 543 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 ENO1P06733 434 aaKnown RBP12.73□□□□□ -0.37
CLK3-218ENST00000566926 CHRNGP07510 517 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 UMODP07911 640 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 ZGLP1P0C6A0 271 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 BCL6P41182 706 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 SLC6A12P48065 614 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 ARFIP2P53365 341 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 RGS1Q08116 209 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 PWP1Q13610 501 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 GTF2H2Q13888 395 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 RBBP7Q16576 425 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 SH2D4BQ5SQS7 431 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 FAM69BQ5VUD6 431 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 CGB2Q6NT52 195 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 GTF2H2CQ6P1K8 395 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 NXPE4Q6UWF7 544 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 GPRIN3Q6ZVF9 776 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 VN1R4Q7Z5H5 301 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 TMPRSS11BQ86T26 416 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 HPS6Q86YV9 775 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 CLYBLQ8N0X4 340 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 GBP7Q8N8V2 638 aaPredicted RBP12.73□□□□□ -0.37
CLK3-218ENST00000566926 TRPV3Q8NET8 790 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 CRB3Q9BUF7 120 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 RABEP2Q9H5N1 569 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 SOX17Q9H6I2 414 aaPredicted RBP12.73□□□□□ -0.37
CLK3-218ENST00000566926 ANKHQ9HCJ1 492 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 ZNF71Q9NQZ8 489 aaPredicted RBP12.73□□□□□ -0.37
CLK3-218ENST00000566926 P4HTMQ9NXG6 502 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 GPRC5BQ9NZH0 403 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 TRPC4Q9UBN4 977 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 CTSFQ9UBX1 484 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 ANAPC2Q9UJX6 822 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 TP53TG5Q9Y2B4 290 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 MAP4K5Q9Y4K4 846 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 SLC22A7Q9Y694 548 aa12.73□□□□□ -0.37
CLK3-218ENST00000566926 A0A0A6YYC8 382 aaPredicted RBP12.72□□□□□ -0.37
CLK3-218ENST00000566926 A0A0G2JND7 137 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 I3L1I5 382 aaPredicted RBP12.72□□□□□ -0.37
CLK3-218ENST00000566926 CLGNO14967 610 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 TAPBPO15533 448 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 FOXS1O43638 330 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 CEACAM4O75871 244 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 C1GALT1C1LP0DN25 315 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 GSTM2P28161 218 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 ARRB2P32121 409 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 HSPA7P48741 367 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 AGTR2P50052 363 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 PGDP52209 483 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 AQP5P55064 265 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 REEP5Q00765 189 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 KLC1Q07866 573 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 CHAF1BQ13112 559 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 COL9A2Q14055 689 aaPredicted RBP12.72□□□□□ -0.37
CLK3-218ENST00000566926 HERC3Q15034 1050 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 DCAF10Q5QP82 559 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 CATSPEREQ5SY80 951 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 C10orf62Q5T681 223 aaPredicted RBP12.72□□□□□ -0.37
CLK3-218ENST00000566926 CPZQ66K79 652 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 TMEM214Q6NUQ4 689 aaKnown RBP12.72□□□□□ -0.37
CLK3-218ENST00000566926 RNF165Q6ZSG1 346 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 PPP1R32Q7Z5V6 425 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 KRT78Q8N1N4 520 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 ARHGEF39Q8N4T4 335 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 TTLQ8NG68 377 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 TRPC4APQ8TEL6 797 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 AGAP11Q8TF27 550 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 C10orf82Q8WW14 230 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 TMEM79Q9BSE2 394 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 NTMT1Q9BV86 223 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 TGIF2Q9GZN2 237 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 PITHD1Q9GZP4 211 aaPredicted RBP12.72□□□□□ -0.37
CLK3-218ENST00000566926 SYNPO2LQ9H987 977 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 MID1IP1Q9NPA3 183 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 ATP13A2Q9NQ11 1180 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 DNAJC11Q9NVH1 559 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 MARCOQ9UEW3 520 aaPredicted RBP12.72□□□□□ -0.37
CLK3-218ENST00000566926 ZFP69BQ9UJL9 534 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 DCTN4Q9UJW0 460 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 ZNF451Q9Y4E5 1061 aa12.72□□□□□ -0.37
CLK3-218ENST00000566926 TRAF6Q9Y4K3 522 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms