RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 COPS7BQ9H9Q2 264 aaPredicted RBP29.07■■■□□ 2.24
CTCF-203ENST00000566078 STARD5Q9NSY2 213 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 FAM86C1Q9NVL1 165 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 SPTBP11277 2137 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 SCAMP2O15127 329 aaKnown RBP29.06■■■□□ 2.24
CTCF-203ENST00000566078 DNAJC8O75937 253 aaPredicted RBP29.06■■■□□ 2.24
CTCF-203ENST00000566078 B3GALT4O96024 378 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 IL6P05231 212 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 CTSBP07858 339 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 IL3P08700 152 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 COX7A2P14406 83 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 HIST1H1TP22492 207 aaPredicted RBP29.06■■■□□ 2.24
CTCF-203ENST00000566078 TSFMP43897 325 aaKnown RBP29.06■■■□□ 2.24
CTCF-203ENST00000566078 GABRA4P48169 554 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 ACTN3Q08043 901 aaPredicted RBP29.06■■■□□ 2.24
CTCF-203ENST00000566078 ART3Q13508 389 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 UGT8Q16880 541 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 IKBIPQ70UQ0 350 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 TMPRSS9Q7Z410 1059 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 SEMA4GQ9NTN9 838 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 SEMA5BQ9P283 1151 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 NCDNQ9UBB6 729 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 LEF1Q9UJU2 399 aaPredicted RBP29.06■■■□□ 2.24
CTCF-203ENST00000566078 PLCL2Q9UPR0 1127 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 MAPRE3Q9UPY8 281 aa29.06■■■□□ 2.24
CTCF-203ENST00000566078 TMPRSS11DO60235 418 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 PGRP06401 933 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 ATP5A1P25705 553 aaKnown RBP29.05■■■□□ 2.24
CTCF-203ENST00000566078 CERS1P27544 350 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 HSD11B2P80365 405 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 C2orf80Q0P641 193 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 PGS1Q32NB8 556 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 COQ5Q5HYK3 327 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 WASHC2DQ5SRD0 308 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 MANEAQ5SRI9 462 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 FAM71E1Q6IPT2 247 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 ABHD13Q7L211 337 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 PCYOX1LQ8NBM8 494 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 OR7A2PQ8NGA2 310 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 TMEM9BQ9NQ34 198 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 RXFP3Q9NSD7 469 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 FTSJ1Q9UET6 329 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 CUL9Q8IWT3 2517 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 SRPX2O60687 465 aaPredicted RBP29.05■■■□□ 2.24
CTCF-203ENST00000566078 KRT16P08779 473 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 S100A3P33764 101 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 SNRPNP63162 240 aaKnown RBP29.05■■■□□ 2.24
CTCF-203ENST00000566078 BTN3A2P78410 334 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 KCNAB1Q14722 419 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 TLR1Q15399 786 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 DPY19L1Q2PZI1 675 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 DNAL1Q4LDG9 190 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 ANKRD26P1Q6NSI1 321 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 TMEM214Q6NUQ4 689 aaKnown RBP29.05■■■□□ 2.24
CTCF-203ENST00000566078 DSELQ8IZU8 1212 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 ACOT4Q8N9L9 421 aa29.05■■■□□ 2.24
CTCF-203ENST00000566078 MRPS2Q9Y399 296 aaKnown RBP29.05■■■□□ 2.24
CTCF-203ENST00000566078 SMIM10L1P0DMW3 83 aa29.04■■■□□ 2.24
CTCF-203ENST00000566078 CKMT2P17540 419 aa29.04■■■□□ 2.24
CTCF-203ENST00000566078 SLC14A1Q13336 389 aa29.04■■■□□ 2.24
CTCF-203ENST00000566078 ZNF574Q6ZN55 896 aaPredicted RBP29.04■■■□□ 2.24
CTCF-203ENST00000566078 KMT5CQ86Y97 462 aa29.04■■■□□ 2.24
CTCF-203ENST00000566078 ZCCHC7Q8N3Z6 543 aaKnown RBP29.04■■■□□ 2.24
CTCF-203ENST00000566078 N4BP2L2Q92802 583 aaPredicted RBP29.04■■■□□ 2.24
CTCF-203ENST00000566078 TM4SF18Q96CE8 201 aa29.04■■■□□ 2.24
CTCF-203ENST00000566078 SMIM10Q96HG1 83 aa29.04■■■□□ 2.24
CTCF-203ENST00000566078 REEP4Q9H6H4 257 aa29.04■■■□□ 2.24
CTCF-203ENST00000566078 EXO1Q9UQ84 846 aaKnown RBP29.04■■■□□ 2.24
CTCF-203ENST00000566078 GSTM5P46439 218 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 TRA2BP62995 288 aaKnown RBP29.03■■■□□ 2.24
CTCF-203ENST00000566078 KCNJ2P63252 427 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 MC1RQ01726 317 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 PAGE3Q5JUK9 113 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 SLC2A7Q6PXP3 512 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 C16orf89Q6UX73 402 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 OR4D9Q8NGE8 314 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 SLC41A2Q96JW4 573 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 OR52E6Q96RD3 313 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 DPYSL5Q9BPU6 564 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 CADM1Q9BY67 442 aaKnown RBP29.03■■■□□ 2.24
CTCF-203ENST00000566078 ROGDIQ9GZN7 287 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 ZNF768Q9H5H4 540 aaKnown RBP29.03■■■□□ 2.24
CTCF-203ENST00000566078 MAP10Q9P2G4 905 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 SCN2AQ99250 2005 aa29.03■■■□□ 2.24
CTCF-203ENST00000566078 TXNDC9O14530 226 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 SCELO95171 688 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 FAM58BPP0C7Q3 252 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 CD59P13987 128 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 ALOX12P18054 663 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 RPL3P39023 403 aaKnown RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 KIR3DL1P43629 444 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 MTTPP55157 894 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 SRSF11Q05519 484 aaKnown RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 KLC1Q07866 573 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 SLAMF1Q13291 335 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 SLC9A5Q14940 896 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 DEFB134Q4QY38 66 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 DEFB107AQ8IZN7 70 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 D2HGDHQ8N465 521 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 KLHL6Q8WZ60 621 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms