RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 H2AFXP16104 143 aaPredicted RBP12.29□□□□□ -0.44
NEDD8-208ENST00000560427 OTX2P32243 289 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 CCR10P46092 362 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 KRT6CP48668 564 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 NAGLUP54802 743 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 BTN3A2P78410 334 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 MAT1AQ00266 395 aaKnown RBP12.29□□□□□ -0.44
NEDD8-208ENST00000560427 DDX39BQ13838 428 aaKnown RBP12.29□□□□□ -0.44
NEDD8-208ENST00000560427 TUBB8Q3ZCM7 444 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 VWA2Q5GFL6 755 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 DEPDC1Q5TB30 811 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 LETMD1Q6P1Q0 360 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 PPP1R32Q7Z5V6 425 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 EXOC3L1Q86VI1 746 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 CCNYL1Q8N7R7 359 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 TBC1D20Q96BZ9 403 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 FER1L6-AS2Q96M78 137 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 QRFPRQ96P65 431 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 SERPINI1Q99574 410 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 AICDAQ9GZX7 198 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 ADNPQ9H2P0 1102 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 CENPHQ9H3R5 247 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 BRF2Q9HAW0 419 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 C3orf18Q9UK00 162 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 BLACEA4D250 179 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 C4orf51C9J302 202 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 AGPSO00116 658 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 PSMD12O00232 456 aaPredicted RBP12.28□□□□□ -0.44
NEDD8-208ENST00000560427 CHST10O43529 356 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 SPAG7O75391 227 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 ZWINTO95229 277 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 TGFB1P01137 390 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 HEXBP07686 556 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 FHP07954 510 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 FURINP09958 794 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 SFTPCP11686 197 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 HSD3B1P14060 373 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 HIST1H1TP22492 207 aaPredicted RBP12.28□□□□□ -0.44
NEDD8-208ENST00000560427 HSD3B2P26439 372 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 SERPINB5P36952 375 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 RAP1GDS1P52306 607 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 PLA2G16P53816 162 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 EMP2P54851 167 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 GALNT1Q10472 559 aaPredicted RBP12.28□□□□□ -0.44
NEDD8-208ENST00000560427 COL9A2Q14055 689 aaPredicted RBP12.28□□□□□ -0.44
NEDD8-208ENST00000560427 TBR1Q16650 682 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 SYT16Q17RD7 645 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 DEFB109BQ30KR1 87 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 ATP1A1-AS1Q5TC04 95 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 C10orf107Q8IVU9 208 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 ZCCHC7Q8N3Z6 543 aaKnown RBP12.28□□□□□ -0.44
NEDD8-208ENST00000560427 C7orf57Q8NEG2 295 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 AGAP11Q8TF27 550 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 RGMAQ96B86 450 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 F2RL3Q96RI0 385 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 MTERF1Q99551 399 aaKnown RBP12.28□□□□□ -0.44
NEDD8-208ENST00000560427 VIPAS39Q9H9C1 493 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 LYRM4Q9HD34 91 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 PRDM7Q9NQW5 492 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 NMRK1Q9NWW6 199 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 P4HTMQ9NXG6 502 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 SLC17A7Q9P2U7 560 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 C19orf25Q9UFG5 118 aaPredicted RBP12.28□□□□□ -0.44
NEDD8-208ENST00000560427 TUBD1Q9UJT1 453 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 ZNF225Q9UK10 706 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 HS3ST3B1Q9Y662 390 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 KCNMB2Q9Y691 235 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 SPACA6W5XKT8 324 aa12.28□□□□□ -0.44
NEDD8-208ENST00000560427 LOC102723996A0A087X1L8 192 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 A0A1B0GTL3 188 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 ZNF860A6NHJ4 632 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 MAGEB17A8MXT2 336 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 PPP6CO00743 305 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 NPHS1O60500 1241 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 OR4F21O95013 312 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 ATXN8OSP0DMR3 200 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 ACPPP15309 386 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 CREB1P16220 341 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 TSPAN8P19075 237 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 HMOX2P30519 316 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 ALDH3A1P30838 453 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 ETV4P43268 484 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 SSR2P43308 183 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 SLC18A1P54219 525 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 RAB38P57729 211 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 RPS13P62277 151 aaKnown RBP12.27□□□□□ -0.45
NEDD8-208ENST00000560427 CSTF3Q12996 717 aaKnown RBP12.27□□□□□ -0.45
NEDD8-208ENST00000560427 ATP1A4Q13733 1029 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 AP5B1Q2VPB7 878 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 MINDY4Q4G0A6 757 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 FAM69BQ5VUD6 431 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 TMEM205Q6UW68 189 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 QSOX2Q6ZRP7 698 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 SHISA6Q6ZSJ9 500 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 RPS27LQ71UM5 84 aaKnown RBP12.27□□□□□ -0.45
NEDD8-208ENST00000560427 HDXQ7Z353 690 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 CA13Q8N1Q1 262 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 CDYL2Q8N8U2 506 aa12.27□□□□□ -0.45
NEDD8-208ENST00000560427 GBP7Q8N8V2 638 aaPredicted RBP12.27□□□□□ -0.45
NEDD8-208ENST00000560427 CLEC1AQ8NC01 280 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms