RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 MLIPQ5VWP3 458 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 RNF165Q6ZSG1 346 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 ZCCHC7Q8N3Z6 543 aaKnown RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 ENDOVQ8N8Q3 282 aaKnown RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 KDF1Q8NAX2 398 aaPredicted RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 OR6Y1Q8NGX8 325 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 MIEF2Q96C03 454 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 MTFMTQ96DP5 389 aaKnown RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 RNF31Q96EP0 1072 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 NAF1Q96HR8 494 aaKnown RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 VPS50Q96JG6 964 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 OR1F2PQ96R84 312 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 F2RL3Q96RI0 385 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 CCNL2Q96S94 520 aaPredicted RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 SHCBP1LQ9BZQ2 653 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 ILKAPQ9H0C8 392 aaPredicted RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 OR51B5Q9H339 312 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 KLHL31Q9H511 634 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 THAP1Q9NVV9 213 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 LYARQ9NX58 379 aaKnown RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 VPS29Q9UBQ0 182 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 ADAM29Q9UKF5 820 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 MRPS2Q9Y399 296 aaKnown RBP9.55□□□□□ -0.88
USP3-216ENST00000559873 TRAF6Q9Y4K3 522 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 TIMM22Q9Y584 194 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 PCDHGA6Q9Y5G7 932 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 MAU2Q9Y6X3 613 aa9.55□□□□□ -0.88
USP3-216ENST00000559873 AKAP13Q12802 2813 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 IGLV3-12A0A075B6K2 115 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 LOC101059948A0A1B0GTJ6 334 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 SERTM1A2A2V5 107 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 BLACEA4D250 179 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 SYNDIG1LA6NDD5 238 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 ZNF860A6NHJ4 632 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 SGK494L7N484 410 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 SLC28A1O00337 649 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 PCDH17O14917 1159 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 GUCY1B2O75343 617 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 SH3BGRLO75368 114 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 RSL1D1O76021 490 aaKnown RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 MYO1DO94832 1006 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 MED26O95402 600 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 ATXN8OSP0DMR3 200 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 SMIM10L1P0DMW3 83 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 RNH1P13489 461 aaKnown RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 LIFP15018 202 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 HIST1H1TP22492 207 aaPredicted RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 PTPN4P29074 926 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 XCR1P46094 333 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 HK2P52789 917 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 FOXA1P55317 472 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 TMPRSS3P57727 454 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 ACSM2AQ08AH3 577 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 ABRAXAS2Q15018 415 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 TGIF1Q15583 401 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 TCHHL1Q5QJ38 904 aaPredicted RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 ACSM2BQ68CK6 577 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 CLEC6AQ6EIG7 209 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 OR4C11Q6IEV9 310 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 MRPL14Q6P1L8 145 aaKnown RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 FAM199XQ6PEV8 388 aaPredicted RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 CYP20A1Q6UW02 462 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 OVCH1Q7RTY7 1134 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 PDSS2Q86YH6 399 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 RAB43Q86YS6 212 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 SPACA3Q8IXA5 215 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 DDIASQ8IXT1 998 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 C7orf57Q8NEG2 295 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 OR51Q1Q8NH59 317 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 AGR3Q8TD06 166 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 TWIST2Q8WVJ9 160 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 STARD8Q92502 1023 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 SMIM10Q96HG1 83 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 METTL2AQ96IZ6 378 aaKnown RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 SLC45A3Q96JT2 553 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 HBEGFQ99075 208 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 ACTL8Q9H568 366 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 RIC8BQ9NVN3 520 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 MS4A12Q9NXJ0 267 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 HCN3Q9P1Z3 774 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 PHF11Q9UIL8 331 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 FARSAQ9Y285 508 aaKnown RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 RAXQ9Y2V3 346 aa9.54□□□□□ -0.88
USP3-216ENST00000559873 PTRH2Q9Y3E5 179 aaKnown RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 URB1O60287 2271 aaKnown RBP9.54□□□□□ -0.88
USP3-216ENST00000559873 WDFY3Q8IZQ1 3526 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 A0A087WV48 116 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 A0A0G2JN53 185 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 ZNF891A8MT65 544 aaPredicted RBP9.53□□□□□ -0.88
USP3-216ENST00000559873 SLCO1B7G3V0H7 640 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 SAP18O00422 153 aaKnown RBP9.53□□□□□ -0.88
USP3-216ENST00000559873 PLPP1O14494 284 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 SNNO75324 88 aaPredicted RBP9.53□□□□□ -0.88
USP3-216ENST00000559873 LYPLA1O75608 230 aaPredicted RBP9.53□□□□□ -0.88
USP3-216ENST00000559873 CREG1O75629 220 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 ETHE1O95571 254 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 TBX6O95947 436 aaPredicted RBP9.53□□□□□ -0.88
USP3-216ENST00000559873 RECKO95980 971 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 FHP07954 510 aa9.53□□□□□ -0.88
USP3-216ENST00000559873 PRPH2P23942 346 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms