RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TBC1D25Q3MII6 688 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 UGT3A2Q3SY77 523 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 NKAIN1Q4KMZ8 207 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 ATP6AP1LQ52LC2 224 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 ARHGAP40Q5TG30 622 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 VN1R5Q7Z5H4 357 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 NUDT13Q86X67 352 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 MARCH9Q86YJ5 346 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 METTL4Q8N3J2 472 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 ZCCHC7Q8N3Z6 543 aaKnown RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 GALNT6Q8NCL4 622 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 GATA6Q92908 595 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 FGF11Q92914 225 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 KIAA1143Q96AT1 154 aaPredicted RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 FKBP10Q96AY3 582 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 TUBGCP3Q96CW5 907 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 VPS50Q96JG6 964 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 C10orf90Q96M02 699 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 GBP5Q96PP8 586 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 MACROD1Q9BQ69 325 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 YIPF2Q9BWQ6 316 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 TRIM55Q9BYV6 548 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 C20orf27Q9GZN8 174 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 NSRP1Q9H0G5 558 aaKnown RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 KLHL31Q9H511 634 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 DDX31Q9H8H2 851 aaKnown RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 ZNF395Q9H8N7 513 aaPredicted RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 WDR41Q9HAD4 459 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 LRTM1Q9HBL6 345 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 LYRM4Q9HD34 91 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 MKKSQ9NPJ1 570 aaPredicted RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 ASCL3Q9NQ33 180 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 LHX9Q9NQ69 397 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 FARSBQ9NSD9 589 aaKnown RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 PNPOQ9NVS9 261 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 C1orf109Q9NX04 203 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 LYARQ9NX58 379 aaKnown RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 SIRT5Q9NXA8 310 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 MS4A12Q9NXJ0 267 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 IFT80Q9P2H3 777 aaPredicted RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 DHCR7Q9UBM7 475 aaKnown RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 DKK4Q9UBT3 224 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 PHF11Q9UIL8 331 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 NXT1Q9UKK6 140 aaKnown RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 MAPRE3Q9UPY8 281 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 MRPS33Q9Y291 106 aaKnown RBP8.76□□□□□ -1.01
LDLR-210ENST00000559340 PADI2Q9Y2J8 665 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 NAALAD2Q9Y3Q0 740 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 MAP4K5Q9Y4K4 846 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 CACNA1GO43497 2377 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 ZFHX4Q86UP3 3567 aa8.76□□□□□ -1.01
LDLR-210ENST00000559340 NUP210LQ5VU65 1888 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 A0A0A6YYC8 382 aaPredicted RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 C21orf140B9A014 251 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 I3L1I5 382 aaPredicted RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 CLDN4O14493 209 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 PIP5K1BO14986 540 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 FOXS1O43638 330 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 EDF1O60869 148 aaKnown RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 SH3BGRLO75368 114 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 SKAP2O75563 359 aaPredicted RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 SCELO95171 688 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 TIAF1O95411 115 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 IGHEP01854 428 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 RAB40ALP0C0E4 278 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 LINC00032P0C843 101 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 LIPCP11150 499 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 RNH1P13489 461 aaKnown RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 IL1RNP18510 177 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 HIST1H1TP22492 207 aaPredicted RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 ATP5A1P25705 553 aaKnown RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 ARRB2P32121 409 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 RORAP35398 523 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 HTR6P50406 440 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 PCBP4P57723 403 aaKnown RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 BTKQ06187 659 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 BIKQ13323 160 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 DSG2Q14126 1118 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 PDCD2Q16342 344 aaPredicted RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 DEFB134Q4QY38 66 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 TCHHL1Q5QJ38 904 aaPredicted RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 CCNYL2Q5T2Q4 361 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 PRAMEF17Q5VTA0 474 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 C1orf189Q5VU69 101 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 MLIPQ5VWP3 458 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 SCIMPQ6UWF3 145 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 FAM47EQ6ZV65 393 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 ACAD11Q709F0 780 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 OVCH1Q7RTY7 1134 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 CACNA2D3Q8IZS8 1091 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 ARHGEF39Q8N4T4 335 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 IL22RA1Q8N6P7 574 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 ACOT4Q8N9L9 421 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 OR9A4Q8NGU2 314 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 CHTF18Q8WVB6 975 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 C19orf60Q96EN9 201 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 OR1F2PQ96R84 312 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 FAIM2Q9BWQ8 316 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 GPR87Q9BY21 358 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 ACPTQ9BZG2 426 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms