RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	RHBDL1	O75783	438 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	RECQL5	O94762	991 aa	Predicted RBP	3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	MT-ND2	P03891	347 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	PROS1	P07225	676 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	ODC1	P11926	461 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	ELK1	P19419	428 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	FAS	P25445	335 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	HNRNPA3	P51991	378 aa	Known RBP	3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	RBPJ	Q06330	500 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	GRB14	Q14449	540 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	TEX35	Q5T0J7	233 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	ITPRIPL1	Q6GPH6	555 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	ZNF600	Q6ZNG1	722 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	ANKRD33	Q7Z3H0	272 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	U2AF1L4	Q8WU68	220 aa	Known RBP	3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	GTSF1	Q8WW33	167 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	CFAP57	Q96MR6	1250 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	LRRC3B	Q96PB8	259 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	SIGLEC12	Q96PQ1	595 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	APOL6	Q9BWW8	343 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	UBA5	Q9GZZ9	404 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	FNDC4	Q9H6D8	234 aa	Predicted RBP	3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	PLEKHA3	Q9HB20	300 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	MYOZ2	Q9NPC6	264 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	VNN3	Q9NY84	501 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	AGTPBP1	Q9UPW5	1226 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	SATB2	Q9UPW6	733 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	PLEKHA6	Q9Y2H5	1048 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	NACAD	O15069	1562 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	VPS8	Q8N3P4	1428 aa		3.02	□□□□□ -1.93
VPS13C-208	ENST00000559119	LOC390937	A0A1W2PQ73	354 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	FBP2	O00757	339 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	CELF2	O95319	508 aa	Known RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	DNTT	P04053	509 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	TPM2	P07951	284 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	ADAR	P55265	1226 aa	Known RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	PEX3	P56589	373 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	SULT2A1	Q06520	285 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	SNTB1	Q13884	538 aa	Known RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	CRMP1	Q14194	572 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	MEA1	Q16626	185 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	LRRC37A5P	Q49AS3	106 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	SUSD4	Q5VX71	490 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	CGB2	Q6NT52	195 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	SLC26A7	Q8TE54	656 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	FRAT1	Q92837	279 aa	Predicted RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	SKA1	Q96BD8	255 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	ZNF799	Q96GE5	643 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	GDAP1L1	Q96MZ0	367 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	MCCC1	Q96RQ3	725 aa	Predicted RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	HSD17B14	Q9BPX1	270 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	MXD3	Q9BW11	206 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	BLOC1S4	Q9NUP1	217 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	DBF4	Q9UBU7	674 aa	Predicted RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	NIP7	Q9Y221	180 aa	Known RBP eCLIP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	MAGED1	Q9Y5V3	778 aa	Predicted RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	GOLGA3	Q08378	1498 aa		3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	RRBP1	Q9P2E9	1410 aa	Known RBP	3.01	□□□□□ -1.93
VPS13C-208	ENST00000559119	SMARCA2	P51531	1590 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	ZBED9	Q6R2W3	1325 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	LMO7DN	F2Z398	122 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	SPRY1	O43609	319 aa	Predicted RBP	3	□□□□□ -1.93
VPS13C-208	ENST00000559119	OR52Z1	P0C646	297 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	MEOX2	P50222	304 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	MTCP1	P56278	107 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	FASTK	Q14296	549 aa	Known RBP	3	□□□□□ -1.93
VPS13C-208	ENST00000559119	CCL14	Q16627	93 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	GSG1	Q2KHT4	349 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	ARMC4	Q5T2S8	1044 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	REP15	Q6BDI9	236 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	IGFL2	Q6UWQ7	119 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	COX8C	Q7Z4L0	72 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	SPSB1	Q96BD6	273 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	LINC00615	Q96LM1	132 aa	Predicted RBP	3	□□□□□ -1.93
VPS13C-208	ENST00000559119	RCHY1	Q96PM5	261 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	PINK1	Q9BXM7	581 aa		3	□□□□□ -1.93
VPS13C-208	ENST00000559119	RPF1	Q9H9Y2	349 aa	Known RBP	3	□□□□□ -1.93
VPS13C-208	ENST00000559119	PHPT1	Q9NRX4	125 aa	Predicted RBP	3	□□□□□ -1.93
VPS13C-208	ENST00000559119	IARS2	Q9NSE4	1012 aa	Known RBP	3	□□□□□ -1.93
VPS13C-208	ENST00000559119	SMG6	Q86US8	1419 aa	Known RBP	3	□□□□□ -1.93
VPS13C-208	ENST00000559119	EIF4G1	Q04637	1599 aa	Known RBP	3	□□□□□ -1.93
VPS13C-208	ENST00000559119	ANKRD18B	A2A2Z9	1011 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119		E5RGE8	158 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	ADAM20	O43506	726 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	SH3BP5	O60239	455 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	HMGCS2	P54868	508 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	EVC	P57679	992 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	ERVPABLB-1	P60509	514 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	ALCAM	Q13740	583 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	WDR78	Q5VTH9	848 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	TCEAL6	Q6IPX3	200 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	ENPP7	Q6UWV6	458 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	MTERF4	Q7Z6M4	381 aa	Known RBP	2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	PCNP	Q8WW12	178 aa	Known RBP	2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	LIME1	Q9H400	295 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	RRAGD	Q9NQL2	400 aa	Predicted RBP	2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	ITGA11	Q9UKX5	1188 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	GPR34	Q9UPC5	381 aa		2.99	□□□□□ -1.93
VPS13C-208	ENST00000559119	NSG2	Q9Y328	171 aa		2.99	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms