RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 REXO4Q9GZR2 422 aaKnown RBP19.29■□□□□ 0.68
VTI1B-205ENST00000555543 ILKAPQ9H0C8 392 aaPredicted RBP19.29■□□□□ 0.68
VTI1B-205ENST00000555543 CLK4Q9HAZ1 481 aaKnown RBP19.29■□□□□ 0.68
VTI1B-205ENST00000555543 SHANK1Q9Y566 2161 aa19.29■□□□□ 0.68
VTI1B-205ENST00000555543 CNTRLQ7Z7A1 2325 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 SIX3O95343 332 aaPredicted RBP19.28■□□□□ 0.68
VTI1B-205ENST00000555543 RNH1P13489 461 aaKnown RBP19.28■□□□□ 0.68
VTI1B-205ENST00000555543 EPB42P16452 691 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 JAK1P23458 1154 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 SFT2D3Q587I9 215 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 CRB2Q5IJ48 1285 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 TEX35Q5T0J7 233 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 B3GNTL1Q67FW5 361 aaPredicted RBP19.28■□□□□ 0.68
VTI1B-205ENST00000555543 LAS2Q8IYD9 372 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 OR2L5Q8NG80 312 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 ZNF473Q8WTR7 871 aaKnown RBP19.28■□□□□ 0.68
VTI1B-205ENST00000555543 FAR2Q96K12 515 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 F2RL3Q96RI0 385 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 EPS8L2Q9H6S3 715 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 XPR1Q9UBH6 696 aa19.28■□□□□ 0.68
VTI1B-205ENST00000555543 SNRPAP09012 282 aaKnown RBP19.27■□□□□ 0.68
VTI1B-205ENST00000555543 MAOAP21397 527 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 CERS1P27544 350 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 PCBP2Q15366 365 aaKnown RBP eCLIP19.27■□□□□ 0.68
VTI1B-205ENST00000555543 HIST2H2ACQ16777 129 aaPredicted RBP19.27■□□□□ 0.68
VTI1B-205ENST00000555543 BTBD16Q32M84 506 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 PLAG1Q6DJT9 500 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 HIST2H2AA3Q6FI13 130 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 GRHL2Q6ISB3 625 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 ABHD17CQ6PCB6 329 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 PAPD4Q6PIY7 484 aaKnown RBP19.27■□□□□ 0.68
VTI1B-205ENST00000555543 ADGRD1Q6QNK2 874 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 QSOX2Q6ZRP7 698 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 UBE3DQ7Z6J8 389 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 RNF175Q8N4F7 328 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 PTGR2Q8N8N7 351 aaPredicted RBP19.27■□□□□ 0.68
VTI1B-205ENST00000555543 OR7G3Q8NG95 312 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 C19orf60Q96EN9 201 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 MS4A8Q9BY19 250 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 PCDHGA10Q9Y5H3 936 aa19.27■□□□□ 0.68
VTI1B-205ENST00000555543 CPAMD8Q8IZJ3 1885 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 IGKV3D-11A0A0A0MRZ8 115 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 PSMD12O00232 456 aaPredicted RBP19.26■□□□□ 0.67
VTI1B-205ENST00000555543 E2F3O00716 465 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 PCNAP12004 261 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 ICAM2P13598 275 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 UQCRFS1P47985 274 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 OR4D2P58180 307 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 SLC29A2Q14542 456 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 TSNAXIP1Q2TAA8 658 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 MED27Q6P2C8 311 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 TRIM40Q6P9F5 258 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 GOLGA7Q7Z5G4 137 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 IQCKQ8N0W5 287 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 TMEM52Q8NDY8 209 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 PHF21BQ96EK2 531 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 SCYL1Q96KG9 808 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 CNDP1Q96KN2 507 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 PTCHD1Q96NR3 888 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 LMF1Q96S06 567 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 NECTIN3Q9NQS3 549 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 ANGPTL3Q9Y5C1 460 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 COL12A1Q99715 3063 aa19.26■□□□□ 0.67
VTI1B-205ENST00000555543 FLNBO75369 2602 aaKnown RBP19.26■□□□□ 0.67
VTI1B-205ENST00000555543 SETXQ7Z333 2677 aaKnown RBP19.25■□□□□ 0.67
VTI1B-205ENST00000555543 RP1L1Q8IWN7 2480 aaPredicted RBP19.25■□□□□ 0.67
VTI1B-205ENST00000555543 PRMT3O60678 531 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 SH3BGRLO75368 114 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 RBP1P09455 135 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 SBK3P0C264 359 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 COL6A2P12110 1019 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 EEF1DP29692 281 aaKnown RBP19.25■□□□□ 0.67
VTI1B-205ENST00000555543 HNRNPFP52597 415 aaKnown RBP19.25■□□□□ 0.67
VTI1B-205ENST00000555543 GTF2H2Q13888 395 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 GTF2H2CQ6P1K8 395 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 ZNF793Q6ZN11 406 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 MYLK4Q86YV6 388 aaPredicted RBP19.25■□□□□ 0.67
VTI1B-205ENST00000555543 CISD2Q8N5K1 135 aaKnown RBP19.25■□□□□ 0.67
VTI1B-205ENST00000555543 EFCAB3Q8N7B9 438 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 FAM47BQ8NA70 645 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 CATSPER1Q8NEC5 780 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 DNAJB14Q8TBM8 379 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 UBE2E3Q969T4 207 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 SNRNP40Q96DI7 357 aaKnown RBP19.25■□□□□ 0.67
VTI1B-205ENST00000555543 CSF3RQ99062 836 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 NPLQ9BXD5 320 aaPredicted RBP19.25■□□□□ 0.67
VTI1B-205ENST00000555543 PRDM7Q9NQW5 492 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 PLA2G3Q9NZ20 509 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 NTNG1Q9Y2I2 539 aa19.25■□□□□ 0.67
VTI1B-205ENST00000555543 LRRK2Q5S007 2527 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 A0A088AWK7 358 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 TCRBV16S1A1N1A0A5B0 115 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 TGFBR3LH3BV60 316 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 RTCAO00442 366 aaKnown RBP19.24■□□□□ 0.67
VTI1B-205ENST00000555543 B3GALT2O43825 422 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 F10P00742 488 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 TGFB1P01137 390 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 UQCRHP07919 91 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 ZNF10P21506 573 aaPredicted RBP19.24■□□□□ 0.67
VTI1B-205ENST00000555543 HPDP32754 393 aaPredicted RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms