RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.49□□□□□ -0.41
CPSF6-204ENST00000547486 LGI4Q8N135 537 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 BBOF1Q8ND07 529 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 TMEM52Q8NDY8 209 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 SPATA4Q8NEY3 305 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 CCDC120Q96HB5 630 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 WHRNQ9P202 907 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 LRFN1Q9P244 771 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 COPG2Q9UBF2 871 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 SH3BGRL2Q9UJC5 107 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 NPIPA1Q9UND3 350 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 CLDN16Q9Y5I7 305 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 CACNA1DQ01668 2161 aa12.49□□□□□ -0.41
CPSF6-204ENST00000547486 FAM187AA6NFU0 413 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 SAGE2PA6NJ88 616 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 FAM159BA6NKW6 160 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 PSMD12O00232 456 aaPredicted RBP12.48□□□□□ -0.41
CPSF6-204ENST00000547486 SLC19A2O60779 497 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 FAM155BO75949 473 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 CD46P15529 392 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 PPP2R1BP30154 601 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 HSPA7P48741 367 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 SLC12A2P55011 1212 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 C2orf54Q08AI8 447 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 C3AR1Q16581 482 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 RNFT1Q5M7Z0 435 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 CYS1Q717R9 158 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 GPSM1Q86YR5 675 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 SIAH3Q8IW03 269 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 APCDD1LQ8NCL9 501 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 GAL3ST3Q96A11 431 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 UBXN10Q96LJ8 280 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 GPR137Q96N19 417 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 FRMD6Q96NE9 622 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 QRFPRQ96P65 431 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 GPR22Q99680 433 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 RBBP8Q99708 897 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 NT5DC2Q9H857 520 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 TRIM45Q9H8W5 580 aaPredicted RBP12.48□□□□□ -0.41
CPSF6-204ENST00000547486 ZNF835Q9Y2P0 537 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 ASB1Q9Y576 335 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 CENPEQ02224 2701 aa12.48□□□□□ -0.41
CPSF6-204ENST00000547486 DIDO1Q9BTC0 2240 aaKnown RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ARHGAP10A1A4S6 786 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 PRSS44E7EML9 344 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ERI3O43414 337 aaKnown RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 EPORP19235 508 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 CD22P20273 847 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 TRHRP34981 398 aaPredicted RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 GPR143P51810 404 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 PLA2G16P53816 162 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 STXBP1P61764 594 aaKnown RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ALDH6A1Q02252 535 aaKnown RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 CALCOCO2Q13137 446 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 DOC2AQ14183 400 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ZKSCAN8Q15776 578 aaPredicted RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 MAPKAPK3Q16644 382 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.47□□□□□ -0.417e-8■■■□□ 19.2
CPSF6-204ENST00000547486 ADPRMQ3LIE5 342 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 MRGPRGQ86SM5 289 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 TICAM1Q8IUC6 712 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 SCUBE1Q8IWY4 988 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 SLC34A3Q8N130 599 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ARMC10Q8N2F6 343 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 HORMAD2Q8N7B1 307 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 TMEM178AQ8NBL3 297 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ADAMTS18Q8TE60 1221 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 THAP3Q8WTV1 239 aaPredicted RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 CCT6BQ92526 530 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 FAR2Q96K12 515 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 CPNE1Q99829 537 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 DNAJC11Q9NVH1 559 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 GPRC5BQ9NZH0 403 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 TINAGQ9UJW2 476 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ZNF223Q9UK11 482 aaPredicted RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 PTBP2Q9UKA9 531 aaKnown RBP12.47□□□□□ -0.41
CPSF6-204ENST00000547486 ENTPD4Q9Y227 616 aa12.47□□□□□ -0.41
CPSF6-204ENST00000547486 MYOCOSA0A1B0GUC4 107 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 CYR61O00622 381 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 EIF3HO15372 352 aaKnown RBP eCLIP12.46□□□□□ -0.412e-6■□□□□ 9.4
CPSF6-204ENST00000547486 ASNA1O43681 348 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 NME2P1O60361 137 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 CLEC3AO75596 197 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 STK16O75716 305 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 SLC25A12O75746 678 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 MYO1DO94832 1006 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 STMN1P16949 149 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 NME2P22392 152 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 GP5P40197 560 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 CYB561P49447 251 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 HLCSP50747 726 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 PLTPP55058 493 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 ATP6V0D1P61421 351 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 HSF1Q00613 529 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 RBPJQ06330 500 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 DLG1Q12959 904 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 ART3Q13508 389 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 KRTCAP3Q53RY4 240 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 SULT1C3Q6IMI6 304 aa12.46□□□□□ -0.41
CPSF6-204ENST00000547486 ABHD17CQ6PCB6 329 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms