RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CCL16O15467 120 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 DPM1O60762 260 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 KLHL18O94889 574 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 KCNK2O95069 426 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 RPLP0P05388 317 aaKnown RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 KLK1P06870 262 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 NPPBP16860 134 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 CHI3L1P36222 383 aaPredicted RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 RPS26P62854 115 aaKnown RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 CSNK2BP67870 215 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 TUBA1BP68363 451 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 DEFB103AP81534 67 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 PTGES3Q15185 160 aaKnown RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 C10orf62Q5T681 223 aaPredicted RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 USP43Q70EL4 1123 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 TUBA1AQ71U36 451 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 CAMKMTQ7Z624 323 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 PARP16Q8N5Y8 322 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 STARD8Q92502 1023 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 FCGR1BQ92637 280 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 WRAP53Q9BUR4 548 aaKnown RBP15.14■□□□□ 0.01
LDLR-204ENST00000545707 SPATA9Q9BWV2 254 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 C1GALT1Q9NS00 363 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 ACER3Q9NUN7 267 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 FKBP14Q9NWM8 211 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 CORO2BQ9UQ03 480 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 POFUT2Q9Y2G5 429 aa15.14■□□□□ 0.01
LDLR-204ENST00000545707 ATG13O75143 517 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 ANXA8P13928 327 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 HSD3B1P14060 373 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 ALOX12P18054 663 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 HSD3B2P26439 372 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 UGT2B10P36537 528 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 RGS6P49758 472 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 CDK6Q00534 326 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 ZNF763Q0D2J5 394 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 DMC1Q14565 340 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 MED22Q15528 200 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 DUSP7Q16829 419 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 LEXMQ3ZCV2 418 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 CFAP206Q8IYR0 622 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 GLYATL1Q969I3 302 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 ANKMY1Q9P2S6 941 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 IFT52Q9Y366 437 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 SNX8Q9Y5X2 465 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 AP2A2O94973 939 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 GASTP01350 101 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 IGFBP1P08833 259 aaPredicted RBP15.13■□□□□ 0.01
LDLR-204ENST00000545707 FURINP09958 794 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 CYP2A6P11509 494 aaPredicted RBP15.13■□□□□ 0.01
LDLR-204ENST00000545707 TYRP14679 529 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 PCSK2P16519 638 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 NKX2-5P52952 324 aaPredicted RBP15.13■□□□□ 0.01
LDLR-204ENST00000545707 METAP1P53582 386 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 KCNJ8Q15842 424 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 ZNF284Q2VY69 593 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 SLC44A2Q8IWA5 706 aaPredicted RBP15.13■□□□□ 0.01
LDLR-204ENST00000545707 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.13■□□□□ 0.01
LDLR-204ENST00000545707 CYP4Z2PQ8N1L4 340 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 TRAM1L1Q8N609 369 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 OR52N2Q8NGI0 321 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.13■□□□□ 0.012e-36■■■■■ 39.1
LDLR-204ENST00000545707 PXYLP1Q8TE99 480 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 C16orf78Q8WTQ4 265 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 PPCDCQ96CD2 204 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 VWCEQ96DN2 955 aa15.13■□□□□ 0.01
LDLR-204ENST00000545707 FAM32AQ9Y421 112 aaKnown RBP15.13■□□□□ 0.01
LDLR-204ENST00000545707 HTR3EA5X5Y0 456 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 C8AP07357 584 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 ZNF30P17039 623 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 FEN1P39748 380 aaKnown RBP15.12■□□□□ 0.01
LDLR-204ENST00000545707 ZNF33BQ06732 778 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 RPS26P11Q5JNZ5 115 aaPredicted RBP15.12■□□□□ 0.01
LDLR-204ENST00000545707 BRAT1Q6PJG6 821 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 AMER2Q8N7J2 671 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 AQP11Q8NBQ7 271 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 AP2M1Q96CW1 435 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 COL21A1Q96P44 957 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 IL4I1Q96RQ9 567 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 KCNS3Q9BQ31 491 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 BHLHE41Q9C0J9 482 aaPredicted RBP15.12■□□□□ 0.01
LDLR-204ENST00000545707 ZNF556Q9HAH1 456 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 ATP6V1HQ9UI12 483 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 GPC6Q9Y625 555 aaPredicted RBP15.12■□□□□ 0.01
LDLR-204ENST00000545707 CDH23Q9H251 3354 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 TRBC2A0A5B9 178 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 H3BM21 787 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 GADD45GO95257 159 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 C1orf105O95561 183 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 XPAP23025 273 aaPredicted RBP15.12■□□□□ 0.01
LDLR-204ENST00000545707 TSTQ16762 297 aaKnown RBP15.12■□□□□ 0.01
LDLR-204ENST00000545707 MLIPQ5VWP3 458 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 SPATC1Q76KD6 591 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 FOPNLQ96NB1 174 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 ZSCAN5AQ9BUG6 496 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 ACAT2Q9BWD1 397 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 CEP44Q9C0F1 390 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 WDR37Q9Y2I8 494 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 PCDHGA3Q9Y5H0 932 aa15.12■□□□□ 0.01
LDLR-204ENST00000545707 HCFC2Q9Y5Z7 792 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms