RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 Q8NFD4 153 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CDC26Q8NHZ8 85 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 HGDQ93099 445 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 HLA-CQ95604 372 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 INTS12Q96CB8 462 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 MSANTD3Q96H12 275 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 HRASLS5Q96KN8 279 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CITED4Q96RK1 184 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SMOQ99835 787 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 MED18Q9BUE0 208 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 UCK2Q9BZX2 261 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 LDAHQ9H6V9 325 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ACTR8Q9H981 624 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ZBTB20Q9HC78 741 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 WASH6PQ9NQA3 447 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TEKT2Q9UIF3 430 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SNX6Q9UNH7 406 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PRG3Q9Y2Y8 225 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 AAR2Q9Y312 384 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 DNAJC15Q9Y5T4 150 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 U3KQ87 197 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SH3D21A4FU49 640 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MROH6A6NGR9 719 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 M0QYV0 167 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RFXAPO00287 272 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TNNI3P19429 210 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 C4BPBP20851 252 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TRIM23P36406 574 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 LIPAP38571 399 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MAP2K4P45985 399 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ARHGDIBP52566 201 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PSPHP78330 225 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RHAGQ02094 409 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 DLX2Q07687 328 aaPredicted RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 SLAMF1Q13291 335 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GPR19Q15760 415 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 HACD4Q5VWC8 232 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PLPP4Q5VZY2 271 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CPZQ66K79 652 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CALHM3Q86XJ0 350 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 EIF4E3Q8N5X7 224 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 YIPF7Q8N8F6 280 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GLB1L3Q8NCI6 653 aaPredicted RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 DENND6BQ8NEG7 585 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 OR52K1Q8NGK4 314 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ENKURQ8TC29 256 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SLC2A13Q96QE2 648 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 C19orf43Q9BQ61 176 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MARVELD1Q9BSK0 173 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TAPBPLQ9BX59 468 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TREX1Q9NSU2 369 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 EMC3Q9P0I2 261 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 UXTQ9UBK9 157 aaPredicted RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 KCNK7Q9Y2U2 307 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GMPPBQ9Y5P6 360 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ZNF106Q9H2Y7 1883 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 RPS10-NUDT3A0A1W2PQS6 291 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MYBPHLA2RUH7 354 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 OR6C70A6NIJ9 312 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 NRG2O14511 850 aaPredicted RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 KHNYNO15037 678 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 DCLK1O15075 740 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 IRAK2O43187 625 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SCN2BO60939 215 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CPNE3O75131 537 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 PPM1BO75688 479 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PGLSO95336 258 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RAF1P04049 648 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SEMG1P04279 462 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 FAM157BP0CG42 384 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ICAM2P13598 275 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 HLA-EP13747 358 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CPB1P15086 417 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CD19P15391 556 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 NPR3P17342 541 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GADD45AP24522 165 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GDI1P31150 447 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TNFSF8P32971 234 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RGS6P49758 472 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 DIO1P49895 249 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ATXN1P54253 815 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 BCAT1P54687 386 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 OR4D2P58180 307 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RRAS2P62070 204 aaPredicted RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 RUNX1T1Q06455 604 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SNTA1Q13424 505 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RPS6KA2Q15349 733 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 NR6A1Q15406 480 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 STK11Q15831 433 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 BTBD16Q32M84 506 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PITRM1Q5JRX3 1037 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GPR158Q5T848 1215 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PXDC1Q5TGL8 231 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 BICRALQ6AI39 1079 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 OR6B2Q6IFH4 312 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TXNDC11Q6PKC3 985 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TMPRSS11AQ6ZMR5 421 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MSANTD1Q6ZTZ1 278 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ELSPBP1Q96BH3 223 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TESCQ96BS2 214 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms